Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BFL20_RS19380 Genome accession   NZ_CP018237
Coordinates   3485074..3485811 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 155     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3480074..3490811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFL20_RS19365 (BFL20_19130) clpC 3480528..3483101 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  BFL20_RS19370 (BFL20_19135) yfiH 3483231..3483962 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  BFL20_RS19375 (BFL20_19140) rluD 3483959..3484939 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BFL20_RS19380 (BFL20_19145) comL 3485074..3485811 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BFL20_RS19390 (BFL20_19155) raiA 3486082..3486423 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BFL20_RS31985 pheL 3486527..3486574 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BFL20_RS19395 (BFL20_19160) pheA 3486673..3487833 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  BFL20_RS19400 (BFL20_19165) tyrA 3487876..3488997 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BFL20_RS19405 (BFL20_19170) aroF 3489008..3490078 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BFL20_RS19410 (BFL20_19175) yfiL 3490288..3490653 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=174155 BFL20_RS19380 WP_000197686.1 3485074..3485811(+) (comL) [Escherichia coli strain 155]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=174155 BFL20_RS19380 WP_000197686.1 3485074..3485811(+) (comL) [Escherichia coli strain 155]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment