Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   A1R12_RS06880 Genome accession   NZ_CP014783
Coordinates   1351672..1352136 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain B15     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346672..1357136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS06865 (A1R12_06865) - 1347153..1348973 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  A1R12_RS06870 (A1R12_06870) - 1348954..1350167 (-) 1214 Protein_1328 aminotransferase A -
  A1R12_RS20255 - 1350368..1350529 (-) 162 WP_007409608.1 hypothetical protein -
  A1R12_RS06875 (A1R12_06875) cheV 1350718..1351629 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  A1R12_RS06880 (A1R12_06880) kre 1351672..1352136 (-) 465 WP_003154622.1 YkyB family protein Regulator
  A1R12_RS06885 (A1R12_06885) - 1352259..1353551 (-) 1293 WP_015239757.1 MFS transporter -
  A1R12_RS06890 (A1R12_06890) - 1353627..1354121 (-) 495 WP_095284082.1 L,D-transpeptidase family protein -
  A1R12_RS06895 (A1R12_06895) - 1354196..1355059 (-) 864 WP_061890567.1 metallophosphoesterase -
  A1R12_RS06900 (A1R12_06900) fadH 1355203..1355967 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  A1R12_RS06905 (A1R12_06905) - 1356081..1356630 (+) 550 Protein_1336 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=173964 A1R12_RS06880 WP_003154622.1 1351672..1352136(-) (kre) [Bacillus amyloliquefaciens strain B15]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=173964 A1R12_RS06880 WP_003154622.1 1351672..1352136(-) (kre) [Bacillus amyloliquefaciens strain B15]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment