Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1977   Type   Machinery gene
Locus tag   A1D13_RS10225 Genome accession   NZ_CP014759
Coordinates   2238087..2238893 (-) Length   268 a.a.
NCBI ID   WP_050598156.1    Uniprot ID   -
Organism   Legionella pneumophila strain F4468     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233087..2243893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D13_RS10195 (A1D13_09965) - 2233525..2234178 (-) 654 WP_027224486.1 lysoplasmalogenase -
  A1D13_RS10200 (A1D13_09970) - 2234258..2234758 (-) 501 WP_014844283.1 hypothetical protein -
  A1D13_RS10210 (A1D13_09975) - 2235250..2236110 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  A1D13_RS10215 (A1D13_09980) - 2236227..2237423 (-) 1197 WP_027224485.1 murein transglycosylase A -
  A1D13_RS10220 (A1D13_09985) lpp1976 2237533..2238090 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  A1D13_RS10225 (A1D13_09990) lpp1977 2238087..2238893 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  A1D13_RS10230 (A1D13_09995) lpp1978 2238832..2239146 (-) 315 WP_027224483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A1D13_RS10235 (A1D13_10000) hisC 2239306..2240415 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  A1D13_RS10240 (A1D13_10005) - 2240452..2240793 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  A1D13_RS10245 (A1D13_10010) secF 2240982..2241899 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  A1D13_RS10250 (A1D13_10015) secD 2241912..2243768 (-) 1857 WP_011214250.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31301.36 Da        Isoelectric Point: 9.4356

>NTDB_id=173695 A1D13_RS10225 WP_050598156.1 2238087..2238893(-) (lpp1977) [Legionella pneumophila strain F4468]
MLRGLKKASQLFAPMIWVLIEMGRQTGFSLSEMLISLFLASIITITLTQFYIRSKPQYLKAQERLEINFDLLWIGDLLSD
SIRKAGFTPCVSVEKLKTFDSRHAERKIINFQIENMPQVQLRINRMSDVYTEVANFISPTQIVIEESVISNIKHPLIISD
CRQGEVHTVSKIDKLSNGYQITLKKPLQFRYDEIAYLGEWLEETWFTKQNEKGEKTLHYKLFQTEELSPFIHEFYVTRRL
INQRSVLDFSIGSNKETLRKISVSVRNL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=173695 A1D13_RS10225 WP_050598156.1 2238087..2238893(-) (lpp1977) [Legionella pneumophila strain F4468]
ATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGAAATGGGAAGACAAACAGG
ATTTAGTTTATCTGAGATGCTAATTAGTCTTTTTCTGGCAAGTATTATAACGATAACTCTTACTCAGTTTTATATAAGAA
GCAAGCCTCAATACCTAAAGGCACAAGAACGGTTAGAAATTAATTTTGATTTGCTGTGGATTGGTGATTTACTAAGCGAC
AGTATTAGAAAGGCTGGATTTACTCCATGCGTAAGTGTCGAAAAATTAAAAACTTTTGATTCTCGACATGCAGAGAGGAA
AATAATTAATTTTCAAATTGAAAATATGCCACAAGTTCAACTTCGTATTAACAGAATGAGTGATGTTTATACCGAAGTGG
CGAATTTTATAAGCCCAACACAAATAGTGATTGAAGAGTCAGTAATATCAAATATAAAACACCCATTAATTATTTCTGAT
TGCCGGCAAGGAGAAGTACATACAGTTTCAAAAATAGATAAACTAAGCAATGGATATCAAATTACTTTAAAAAAACCACT
GCAGTTCCGGTACGACGAAATTGCTTACTTGGGAGAGTGGCTTGAAGAAACATGGTTTACTAAACAAAATGAAAAGGGTG
AAAAGACATTACATTACAAACTGTTTCAAACAGAAGAATTAAGTCCATTCATTCATGAATTTTATGTTACCAGACGTCTT
ATCAATCAGAGGTCAGTATTGGATTTTTCAATTGGTAGTAATAAGGAAACGCTACGTAAAATCAGTGTTTCGGTACGAAA
TTTATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1977 Legionella pneumophila str. Paris

97.388

100

0.974
  lpp1977 Legionella pneumophila strain ERS1305867

97.388

100

0.974

Multiple sequence alignment