Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BSR08_RS04525 Genome accession   NZ_CP018184
Coordinates   839185..839634 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain KH2     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 834185..844634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS04485 (BSR08_04545) ctaE 834201..834824 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  BSR08_RS04490 (BSR08_04550) ctaF 834827..835159 (+) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  BSR08_RS04495 (BSR08_04555) ctaG 835187..836080 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  BSR08_RS04500 (BSR08_04560) ylbA 836112..836474 (-) 363 WP_014479712.1 YugN family protein -
  BSR08_RS04505 (BSR08_04565) ylbB 836614..837060 (+) 447 WP_003221362.1 CBS domain-containing protein -
  BSR08_RS04510 (BSR08_04570) ylbC 837144..838184 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  BSR08_RS04515 (BSR08_04575) ylbD 838416..838814 (+) 399 WP_003232233.1 YlbD family protein -
  BSR08_RS04520 (BSR08_04580) ylbE 838830..839069 (+) 240 WP_003232231.1 YlbE-like family protein -
  BSR08_RS04525 (BSR08_04585) ylbF 839185..839634 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  BSR08_RS04530 (BSR08_04590) ylbG 839689..839961 (+) 273 WP_009967171.1 YlbG family protein -
  BSR08_RS04535 (BSR08_04595) rsmD 840284..840838 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSR08_RS04540 (BSR08_04600) coaD 840843..841328 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  BSR08_RS04545 (BSR08_04605) spoVV 841339..842565 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  BSR08_RS04550 (BSR08_04610) ylbK 842746..843528 (+) 783 WP_003232221.1 patatin family protein -
  BSR08_RS04555 (BSR08_04615) sepM 843530..844555 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=173348 BSR08_RS04525 WP_003221370.1 839185..839634(+) (ylbF) [Bacillus subtilis strain KH2]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=173348 BSR08_RS04525 WP_003221370.1 839185..839634(+) (ylbF) [Bacillus subtilis strain KH2]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment