Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB525_RS06115 Genome accession   NZ_CP017685
Coordinates   1212166..1212939 (+) Length   257 a.a.
NCBI ID   WP_000055334.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN007835     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207166..1217939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB525_RS06095 (AB525_05915) trmFO 1207509..1208816 (+) 1308 WP_000195251.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  AB525_RS06100 (AB525_05920) xerC 1209234..1210130 (+) 897 WP_001015604.1 tyrosine recombinase XerC -
  AB525_RS06105 (AB525_05925) hslV 1210127..1210672 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  AB525_RS06110 (AB525_05930) hslU 1210738..1212141 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  AB525_RS06115 (AB525_05935) codY 1212166..1212939 (+) 774 WP_000055334.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB525_RS06120 (AB525_05940) - 1212990..1213082 (+) 93 WP_031785459.1 hypothetical protein -
  AB525_RS06125 (AB525_05945) rpsB 1213281..1214048 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  AB525_RS06130 (AB525_05950) - 1214082..1214195 (+) 114 WP_001789890.1 hypothetical protein -
  AB525_RS06135 (AB525_05955) tsf 1214230..1215111 (+) 882 WP_000201387.1 translation elongation factor Ts -
  AB525_RS06140 (AB525_05960) pyrH 1215248..1215970 (+) 723 WP_000057330.1 UMP kinase -
  AB525_RS06145 (AB525_05965) frr 1215989..1216543 (+) 555 WP_001280003.1 ribosome recycling factor -
  AB525_RS06150 (AB525_05970) - 1216915..1217685 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28727.12 Da        Isoelectric Point: 6.0680

>NTDB_id=171193 AB525_RS06115 WP_000055334.1 1212166..1212939(+) (codY) [Staphylococcus aureus strain CFSAN007835]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENKELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=171193 AB525_RS06115 WP_000055334.1 1212166..1212939(+) (codY) [Staphylococcus aureus strain CFSAN007835]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAATAAAGAGTTGTTTAT
TGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTATTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGC
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment