Detailed information NTG0170863

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: AB478_RS08570
• Genome accession: NZ_CP017679
• Coordinates: 1705962..1706648 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692876.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain CFSAN007883
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1700962..1711648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB478_RS08525 (AB478_08325)	rpmA	1701733..1702017 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
AB478_RS08530 (AB478_08330)	-	1702029..1702349 (-)	321	WP_000633690.1	ribosomal-processing cysteine protease Prp	-
AB478_RS08535 (AB478_08335)	rplU	1702355..1702663 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
AB478_RS08540 (AB478_08340)	mreD	1702899..1703429 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
AB478_RS08545 (AB478_08345)	mreC	1703429..1704271 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
AB478_RS08550 (AB478_08350)	-	1704470..1704589 (-)	120	WP_000840603.1	hypothetical protein	-
AB478_RS08555 (AB478_08355)	-	1704663..1705136 (-)	474	WP_001236738.1	DUF4930 family protein	-
AB478_RS08560	-	1705296..1705493 (+)	198	WP_000025835.1	hypothetical protein	-
AB478_RS08565 (AB478_08360)	-	1705610..1705894 (-)	285	WP_099143921.1	hypothetical protein	-
AB478_RS08570 (AB478_08365)	ysxA/radC	1705962..1706648 (-)	687	WP_000692876.1	RadC family protein	Machinery gene
AB478_RS08575 (AB478_08370)	-	1706645..1707352 (-)	708	WP_000261111.1	prepilin peptidase	-
AB478_RS08585 (AB478_08380)	-	1707620..1708891 (-)	1272	WP_001108341.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
AB478_RS08590 (AB478_08385)	-	1708904..1711534 (-)	2631	WP_000425344.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25297.21 Da
• Isoelectric Point: 6.7572

>NTDB_id=170863 AB478_RS08570 WP_000692876.1 1705962..1706648(-) (ysxA/radC) [Staphylococcus aureus strain CFSAN007883]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=170863 AB478_RS08570 WP_000692876.1 1705962..1706648(-) (ysxA/radC) [Staphylococcus aureus strain CFSAN007883]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCAATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377