Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BKM67_RS04845 Genome accession   NZ_CP017667
Coordinates   958685..960427 (+) Length   580 a.a.
NCBI ID   WP_105183856.1    Uniprot ID   -
Organism   Streptococcus suis strain 1081     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 953685..965427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM67_RS04825 (BKM67_04730) - 954254..955072 (+) 819 WP_002935241.1 NAD kinase -
  BKM67_RS04830 (BKM67_04735) - 955072..955965 (+) 894 WP_024402187.1 RluA family pseudouridine synthase -
  BKM67_RS04835 (BKM67_04740) pta 955983..956957 (+) 975 WP_012775151.1 phosphate acetyltransferase -
  BKM67_RS04840 (BKM67_04745) - 956959..958698 (+) 1740 WP_105125725.1 ABC transporter ATP-binding protein -
  BKM67_RS04845 (BKM67_04750) rcrQ 958685..960427 (+) 1743 WP_105183856.1 ABC transporter ATP-binding protein Regulator
  BKM67_RS04850 (BKM67_04755) - 960417..960803 (+) 387 WP_079395395.1 PaaI family thioesterase -
  BKM67_RS04855 (BKM67_04760) mutY 961036..962196 (+) 1161 WP_161948790.1 A/G-specific adenine glycosylase -
  BKM67_RS04860 (BKM67_04765) - 962861..963661 (-) 801 WP_105119051.1 XRE family transcriptional regulator -
  BKM67_RS04865 (BKM67_04770) - 963792..964262 (+) 471 WP_044677252.1 hypothetical protein -
  BKM67_RS04870 (BKM67_04775) - 964282..964824 (+) 543 WP_105119052.1 hypothetical protein -
  BKM67_RS10925 - 964999..965139 (-) 141 WP_014635984.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64463.64 Da        Isoelectric Point: 5.5279

>NTDB_id=170432 BKM67_RS04845 WP_105183856.1 958685..960427(+) (rcrQ) [Streptococcus suis strain 1081]
MRQSSFKELVRLVLRQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIADGQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDCHSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQHLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAERKIDSEELKGAISFENVSFSYSPDRTLIEQLNIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIALDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEALSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDKSVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=170432 BKM67_RS04845 WP_105183856.1 958685..960427(+) (rcrQ) [Streptococcus suis strain 1081]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACGCCAACCTCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTGCTTCTGACAGTCTATCTACCGATCTTGATTGGTCAGGCAGTCGATGCCGTATTGATAGCAGATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGGTGCAATGGTACTTACCTTTGGTA
ACCAACCGCTTGGTTTACGGAATGGTGGCCGATTTGCGTGAACAGGTCTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATTGTCATTCAGTTGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTAACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGACA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCATTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAATATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGTACTCGCTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCTCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGGTCTCTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGACTGTTTGCTATCTTGGCTCTAGATAGCATTGAT
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGCTGAAGGGAGCTATTTCCTTTGAAAATGTGTCTTTCTCTTATAGCCC
TGACCGTACTCTGATAGAACAGTTGAACATTGATGTCAAAGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTTCTTATGCGCTTCTACGATGTGACGGCTGGTCAGATTGCTTTAGATGGGGTTCCGATT
AGCCAGTACAGTCGTGAGGATCTTCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATTAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACACGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAGGGGTACGATACAGTTTTGGCAGATGGAGGTGAAGCCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTAAAAATACCTAAAATCCTAATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGCTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGACGGAAAAATTGTTGAACAAGGGAATCATGAAGCATTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATAAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-501)

ABC transporter transmembrane region (ABC_membrane)

(22-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.33

97.759

0.384