Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   BKM66_RS09565 Genome accession   NZ_CP017666
Coordinates   1987040..1987489 (-) Length   149 a.a.
NCBI ID   WP_024399878.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1982040..1992489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS09550 (BKM66_09310) - 1982813..1983349 (-) 537 WP_105184266.1 hypothetical protein -
  BKM66_RS09555 (BKM66_09315) - 1983414..1985198 (-) 1785 WP_105184265.1 ABC transporter ATP-binding protein -
  BKM66_RS09560 (BKM66_09320) - 1985338..1987047 (-) 1710 WP_029170963.1 ABC transporter ATP-binding protein -
  BKM66_RS09565 (BKM66_09325) rcrR 1987040..1987489 (-) 450 WP_024399878.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BKM66_RS09570 (BKM66_09330) - 1987711..1988727 (+) 1017 WP_015647495.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  BKM66_RS09575 (BKM66_09335) galU 1988773..1989672 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BKM66_RS09580 (BKM66_09340) - 1989691..1990368 (-) 678 WP_105184264.1 rhomboid family intramembrane serine protease -
  BKM66_RS09585 (BKM66_09345) - 1990352..1990894 (-) 543 WP_024389843.1 5-formyltetrahydrofolate cyclo-ligase -
  BKM66_RS09590 (BKM66_09350) - 1990936..1992063 (-) 1128 WP_024384187.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17664.28 Da        Isoelectric Point: 8.8886

>NTDB_id=170377 BKM66_RS09565 WP_024399878.1 1987040..1987489(-) (rcrR) [Streptococcus suis strain 0061]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELKISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVVDQLKENIRNYKEKKHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=170377 BKM66_RS09565 WP_024399878.1 1987040..1987489(-) (rcrR) [Streptococcus suis strain 0061]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACTATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAAGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGTCG
ATCAATTAAAAGAAAATATTAGAAATTATAAGGAGAAAAAACATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

44.286

93.96

0.416