Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   BKM66_RS00770 Genome accession   NZ_CP017666
Coordinates   123664..124071 (+) Length   135 a.a.
NCBI ID   WP_015646273.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118664..129071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS00745 (BKM66_00740) - 120063..120437 (+) 375 WP_024385120.1 DUF1033 family protein -
  BKM66_RS00750 (BKM66_00745) - 120465..121415 (-) 951 WP_105183744.1 S66 peptidase family protein -
  BKM66_RS00755 (BKM66_00750) comGA 121501..122451 (+) 951 WP_024412239.1 competence type IV pilus ATPase ComGA Machinery gene
  BKM66_RS00760 (BKM66_00755) comGB 122363..123400 (+) 1038 WP_238145568.1 competence type IV pilus assembly protein ComGB Machinery gene
  BKM66_RS00765 (BKM66_00760) comGC 123402..123683 (+) 282 WP_024385124.1 competence type IV pilus major pilin ComGC Machinery gene
  BKM66_RS00770 (BKM66_00765) comGD 123664..124071 (+) 408 WP_015646273.1 competence type IV pilus minor pilin ComGD Machinery gene
  BKM66_RS00775 (BKM66_00770) comGE 124043..124336 (+) 294 WP_105178942.1 competence type IV pilus minor pilin ComGE Machinery gene
  BKM66_RS00780 (BKM66_00775) comGF/cglF 124323..124757 (+) 435 WP_105178941.1 competence type IV pilus minor pilin ComGF Machinery gene
  BKM66_RS00785 (BKM66_00780) comGG 124735..125148 (+) 414 WP_105183746.1 competence type IV pilus minor pilin ComGG -
  BKM66_RS00790 (BKM66_00785) comGH 125198..126151 (+) 954 WP_105183747.1 class I SAM-dependent methyltransferase Machinery gene
  BKM66_RS00795 (BKM66_00790) - 126201..127388 (+) 1188 WP_105183748.1 acetate kinase -
  BKM66_RS00800 (BKM66_00795) - 127702..128253 (+) 552 WP_074391332.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15350.57 Da        Isoelectric Point: 9.8864

>NTDB_id=170304 BKM66_RS00770 WP_015646273.1 123664..124071(+) (comGD) [Streptococcus suis strain 0061]
MLRRKNKAFTLFESLLTLFVISFLAISLSGTVQTAFRSIQEEIFLWEFEAIYKDSQKLAASSHQKVNLAIGGQEVTNGYQ
AVEVPRNVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=170304 BKM66_RS00770 WP_015646273.1 123664..124071(+) (comGD) [Streptococcus suis strain 0061]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTAACCTTATTTGTCATCAGCTTTCTGGCAATCAG
CCTGTCAGGAACGGTGCAAACGGCCTTTCGGTCTATTCAGGAAGAGATTTTTCTCTGGGAGTTTGAAGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCCAGTTCCCACCAAAAAGTGAACCTTGCTATCGGTGGACAGGAGGTTACAAATGGTTATCAG
GCTGTAGAGGTACCCAGAAATGTAGAAGTATTGGAAGGGAAGACCATCACATTTGAAGAAAATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTGAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

48.819

94.074

0.459
  comGD Streptococcus mutans UA159

46.512

95.556

0.444
  comGD Streptococcus mutans UA140

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363

Multiple sequence alignment