Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | KAB07_RS16110 | Genome accession | NZ_CP017654 |
| Coordinates | 3369476..3369991 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain KAB07 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3364476..3374991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KAB07_RS16090 (KAB07_03254) | - | 3364795..3366255 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| KAB07_RS16095 (KAB07_03255) | - | 3366532..3367737 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| KAB07_RS20355 (KAB07_03256) | - | 3367756..3367899 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| KAB07_RS16105 (KAB07_03257) | omp38 | 3368024..3369094 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| KAB07_RS16110 (KAB07_03258) | fimT | 3369476..3369991 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| KAB07_RS16115 (KAB07_03259) | - | 3370100..3371275 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| KAB07_RS16120 (KAB07_03260) | - | 3371402..3371845 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| KAB07_RS16125 (KAB07_03261) | - | 3371888..3372241 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| KAB07_RS16130 (KAB07_03262) | - | 3372324..3372809 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| KAB07_RS16135 (KAB07_03263) | - | 3372802..3374445 (-) | 1644 | WP_070436887.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=170197 KAB07_RS16110 WP_000477147.1 3369476..3369991(+) (fimT) [Acinetobacter baumannii strain KAB07]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=170197 KAB07_RS16110 WP_000477147.1 3369476..3369991(+) (fimT) [Acinetobacter baumannii strain KAB07]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |