Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   A4W85_RS01720 Genome accession   NZ_CP017570
Coordinates   347346..349643 (-) Length   765 a.a.
NCBI ID   WP_056947762.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342346..354643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS01690 (A4W85_01655) - 343076..343429 (+) 354 WP_011374029.1 PqqD family protein -
  A4W85_RS01695 (A4W85_01660) - 343487..344908 (+) 1422 WP_056947754.1 C69 family dipeptidase -
  A4W85_RS01700 (A4W85_01665) - 344982..345833 (+) 852 WP_056947760.1 YitT family protein -
  A4W85_RS01705 (A4W85_01670) - 345882..346097 (-) 216 WP_011374032.1 DUF2187 family protein -
  A4W85_RS01710 (A4W85_01675) - 346257..347138 (+) 882 WP_251945162.1 Cof-type HAD-IIB family hydrolase -
  A4W85_RS01720 (A4W85_01685) helD 347346..349643 (-) 2298 WP_056947762.1 RNA polymerase recycling motor HelD Machinery gene
  A4W85_RS01725 (A4W85_01690) trpS 349999..351015 (+) 1017 WP_096585441.1 tryptophan--tRNA ligase -
  A4W85_RS01730 (A4W85_01695) - 351224..352591 (+) 1368 WP_251945164.1 MATE family efflux transporter -
  A4W85_RS01735 (A4W85_01700) - 352584..353381 (+) 798 WP_016264612.1 DNA/RNA non-specific endonuclease -
  A4W85_RS01740 (A4W85_01705) - 353440..354081 (+) 642 WP_235596249.1 pentapeptide repeat-containing protein -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87037.25 Da        Isoelectric Point: 4.6082

>NTDB_id=169328 A4W85_RS01720 WP_056947762.1 347346..349643(-) (helD) [Latilactobacillus sakei strain TMW 1.578]
MLQEDTQQQEQARVDLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTSQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSHLEADQMVLFSPNRLFSHYISEVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAIRRFKESAPFMQQITDYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPAIIPV
AVWEAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTVLGDYAQD
VFTATYQAGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLSKETALQAFSRDGRLPRVITATKEASLNALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQSSDV
DLLYTLMTRAMHDLTLLGIGTLSPLITSLDPQYYQNITTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=169328 A4W85_RS01720 WP_056947762.1 347346..349643(-) (helD) [Latilactobacillus sakei strain TMW 1.578]
ATGCTACAAGAAGATACGCAACAACAAGAACAAGCCCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAGCAATTGGACAATGCCTATAATGAAACTAAAGATATTGAACAACGTTATGGTGATACTACCAAGGTCAATA
TTACGGAGGTCGATGACCGGATGGAAACCAATGCCGCCGTCCAACAGCAAAAACAACTAGTCGCAGCGGCCGTTGAAAAC
GAAAAACTCCTAACGTCACAACAAAAACGGCTAACGGATTTAGTCGACTCTCCTTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAGGAAGAATCACTCTACATCGGGACCGCCACTTTTATCAACGAGCAAGACCAATTCTTGGTTTACGATTGGC
GAGCACCCATTGCTAGTATTTACTATAATGGCACATTAGGAACCGTCAGTTACGACACGCCTAATGGCCCCGTTAAAGTT
GATTTAACACTAAAACGACAGTTCAAGATTAAAAACGGTCAAATTGAACATCTTTTTGATACAAACGAAACAGTTGGCGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGTGATGAGTACATGCAAAATATCGTTGCAACAATTCAAAAAGAACAAA
ATGATATTATCCGTGATACGACTGCCGATTTACTAATTGTCCAAGGCGTCGCTGGCAGCGGTAAAACCTCCGCTGTTTTA
CAACGCATCGCTTTCTTACTCTATCACAGTCGTAGTCACTTAGAAGCCGATCAAATGGTCCTTTTTTCACCTAATCGCTT
ATTCAGTCACTATATTTCTGAGGTGCTGCCTAGTTTAGGGGAAAAGAATATGCGCCAAGTGACGATGGCTGAATTTTTAA
GTCATCGTTTCTCGGGGCTTCAAGTTGAAACACTCTTCGATCGTTTTGAAAAAGACCAAGCGAGTTTCCCAGAAATGACG
CAAGCAATACGCCGCTTTAAAGAAAGTGCCCCCTTTATGCAACAAATTACGGATTATGTTAAACAGGTTTCTACACAGCC
ATTGGCCTTCAATGACCTCTACTTTGAAGATCGTCCGTTCTTCACAAAAGCGCAAATTAATAAAATTTATCTCGATCTCC
CACATAATATGCGTCCCGGTGATAAATTTATTGCCACTAAAAATACCCTCATTAAACGACTCAAACGCCAAATTAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCAGATGATGACTACCGTGCCATCGTCGGTGATCGCGA
ATTTGATTCTGGCGATTTAGAACAAGCATTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCCGATTTATACGATGCTA
TTTATAACGATTACTTTTTGGATGTGTATACTGAATATCAAAACTTCTTACGGACAGCTTGTCCGGCTATAATTCCGGTT
GCCGTTTGGGAAGCAATGATTGAAACAGTCGCTCAAAATAATGAACGCCACCTCGTCGGTTTAAGTGACGCAGCGCCAAT
TCTGTATCTCCGTGATTTATTAACCGATAGTGGTCAAAATCACAGCATTCAATACTTATTCGTCGATGAGATGCAAGATT
ATAGCATTGCGCAATTCGTTTATCTCCAGCATGCTTTCCCGAACGCTAAATTCACCGTGCTCGGCGATTACGCGCAGGAC
GTCTTTACCGCTACTTATCAAGCCGGTAATTTCATTGAACGCCTCTGCGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
TAGTTTGACGAAGAGCTATCGCGCGACTGCCCCCATCACGAATTTCGCAAAAGCCTTATTGTCTAAAGAAACAGCCTTGC
AAGCCTTTAGTCGTGATGGACGGCTCCCTCGTGTCATCACAGCCACTAAGGAAGCTAGTTTAAATGCCTTAACGCAAGAA
ATTTTCCACCTACAAAAACGGCATGCAACTATCGCCATTTTAACCAAGGATCAACAAACGGCGCGCCAACTTTTCGCCAG
CCTGACTCCCGATGATCAGGTAACACTCATCTCCGAAACCACCCGCTCATTGCCAAAAGGTGTTTTAGTATTACCGTTAT
ATCTCGCTAAAGGTCTCGAATTCGATGCTGTCATTGGTTACGACATTTCAGCAACCACCTTTGGCCAATCAAGTGACGTT
GACTTACTCTACACACTGATGACGCGTGCCATGCACGACTTAACCTTGTTGGGAATTGGTACCCTCAGCCCACTCATTAC
TAGCCTCGATCCTCAATACTACCAAAACATTACAACCACTAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

36.985

100

0.375