Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AWM70_RS19205 Genome accession   NZ_CP014167
Coordinates   4213247..4213738 (+) Length   163 a.a.
NCBI ID   WP_068699103.1    Uniprot ID   A0A1B1N4W2
Organism   Paenibacillus yonginensis strain DCY84     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4208247..4218738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM70_RS19180 (AWM70_19215) - 4208973..4209587 (-) 615 WP_206093384.1 biotin transporter BioY -
  AWM70_RS19185 (AWM70_19220) - 4209716..4210549 (+) 834 WP_169823474.1 energy-coupling factor ABC transporter ATP-binding protein -
  AWM70_RS19190 (AWM70_19225) - 4210534..4212252 (+) 1719 WP_068699097.1 ATP-binding cassette domain-containing protein -
  AWM70_RS19195 (AWM70_19230) - 4212526..4212723 (-) 198 WP_068699099.1 YjzC family protein -
  AWM70_RS19200 (AWM70_19235) rpsF 4212923..4213207 (+) 285 WP_068699101.1 30S ribosomal protein S6 -
  AWM70_RS19205 (AWM70_19240) ssbA 4213247..4213738 (+) 492 WP_068699103.1 single-stranded DNA-binding protein Machinery gene
  AWM70_RS19210 (AWM70_19245) rpsR 4213761..4214033 (+) 273 WP_068699105.1 30S ribosomal protein S18 -
  AWM70_RS19215 (AWM70_19250) - 4214850..4216619 (+) 1770 WP_068699107.1 ABC transporter substrate-binding protein -
  AWM70_RS19220 (AWM70_19255) - 4216690..4217652 (+) 963 WP_068699109.1 ABC transporter permease -
  AWM70_RS19225 (AWM70_19260) opp4C 4217665..4218594 (+) 930 WP_068699111.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17875.63 Da        Isoelectric Point: 4.8453

>NTDB_id=169190 AWM70_RS19205 WP_068699103.1 4213247..4213738(+) (ssbA) [Paenibacillus yonginensis strain DCY84]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTIAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNREGGSGSGGGAPREEAPYSGGGNRSTGNNSSGYSRGNQDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=169190 AWM70_RS19205 WP_068699103.1 4213247..4213738(+) (ssbA) [Paenibacillus yonginensis strain DCY84]
ATGTTGAACCGTGTCATTCTGATCGGCCGGCTTACCCGGGATCCGGAGCTGCGTTATACGCCATCCGGCGTTGCGGTAAC
TCAGTTTACTATCGCAGTGGACAGACCTTTTACGTCGCAAGGCGGAGAAAGAGAAGCGGATTTCATACCGGTCGTAACGT
GGAGACAGCTTGCTGAGACTTGTGCGAACTACCTGCGCAAAGGACGTCTGACTGCTGTAGAAGGGCGCATTCAAGTACGT
AACTATGAGAATAACGAAGGCAAACGTGTTTACGTCACCGAAGTTATTGCTGATAATGTTCGTTTCTTGGAGTCGAACCG
TGAAGGCGGATCAGGCAGCGGCGGAGGTGCGCCGCGGGAAGAAGCCCCTTATAGTGGCGGCGGAAACCGCAGCACCGGCA
ACAACAGCAGCGGTTACTCGCGCGGCAATCAGGATCCATTTTCCGACGACGGGAAGCCGATTGATATTTCGGATGATGAT
TTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1N4W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.647

100

0.601
  ssb Latilactobacillus sakei subsp. sakei 23K

49.714

100

0.534
  ssb Neisseria meningitidis MC58

34.091

100

0.368
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.697

80.982

0.362

Multiple sequence alignment