Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BIZ52_RS14395 Genome accession   NZ_CP017457
Coordinates   3204901..3206151 (+) Length   416 a.a.
NCBI ID   WP_027228999.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. fraseri strain Detroit-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3199901..3211151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIZ52_RS14360 (BIZ52_14190) - 3200193..3200492 (-) 300 WP_027229006.1 helix-turn-helix transcriptional regulator -
  BIZ52_RS14365 (BIZ52_14195) - 3200745..3201089 (-) 345 WP_027229005.1 hypothetical protein -
  BIZ52_RS14370 (BIZ52_14200) - 3201206..3201835 (+) 630 WP_027229004.1 trimeric intracellular cation channel family protein -
  BIZ52_RS14375 (BIZ52_14205) - 3202049..3202543 (-) 495 WP_027229003.1 peptidylprolyl isomerase -
  BIZ52_RS14380 (BIZ52_14210) tgt 3202570..3203721 (-) 1152 WP_027229002.1 tRNA guanosine(34) transglycosylase Tgt -
  BIZ52_RS14385 (BIZ52_14215) - 3203783..3204274 (-) 492 WP_027229001.1 disulfide bond formation protein B -
  BIZ52_RS14390 (BIZ52_14220) - 3204271..3204699 (-) 429 WP_027229000.1 cytochrome c5 family protein -
  BIZ52_RS14395 (BIZ52_14225) cqsA 3204901..3206151 (+) 1251 WP_027228999.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  BIZ52_RS14400 (BIZ52_14230) - 3206234..3207259 (-) 1026 WP_027228998.1 response regulator -
  BIZ52_RS14405 (BIZ52_14235) - 3207541..3208104 (+) 564 WP_027228997.1 HdeD family acid-resistance protein -
  BIZ52_RS14410 (BIZ52_14240) - 3208133..3209422 (-) 1290 WP_027222876.1 HAMP domain-containing sensor histidine kinase -
  BIZ52_RS14415 (BIZ52_14245) hemC 3209663..3210592 (+) 930 WP_027228996.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46370.03 Da        Isoelectric Point: 9.0022

>NTDB_id=169072 BIZ52_RS14395 WP_027228999.1 3204901..3206151(+) (cqsA) [Legionella pneumophila subsp. fraseri strain Detroit-1]
MSNTEYLTSDNETQYVNGEEEHQRHAYPEFINISMEKYYVDRVNKSWRGKHILNGKTPTANSLIFSSNDYLNISQHPQLI
NAQIAAMQKYGNGQMQSAVFLNNSSFLLTQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKLIPFRHNSIDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYAEIARKFKCLLIVDESHSLGTHGPQGKGMV
AKLGLSSQIDLLTASLAKAFSGRGGLIAGDRRLIEYIRYSSLPSIFSSALMPHDLAGFSTSLEIITQEEWRRKKLQTNAA
FLREALSCLRINIGGSESQIVPLITGSEANTLWLRDELEKEELFGAVFCSPATPKNKCLIRLSIGAHHEKSDLLRVVECL
ANLARKRPEMPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=169072 BIZ52_RS14395 WP_027228999.1 3204901..3206151(+) (cqsA) [Legionella pneumophila subsp. fraseri strain Detroit-1]
ATGAGCAATACAGAATACCTGACAAGTGATAACGAGACTCAATATGTCAATGGAGAAGAAGAACATCAACGCCATGCTTA
TCCTGAGTTCATCAACATTTCCATGGAAAAATATTACGTGGATCGAGTCAATAAATCCTGGCGAGGGAAACACATACTCA
ATGGCAAAACCCCAACTGCAAATTCACTGATTTTTTCAAGCAATGATTATTTAAACATTAGTCAACATCCGCAATTAATT
AACGCTCAAATTGCGGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCCGTATTTTTAAATAACAGCTCTTTCTT
GCTCACACAATGTGAAAAAAAATTTAGTTCCTTTTTAAATTATTCTGCAGCCTTGCTAACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTATAATACACCAGTGTATCTGGATTTTTATGCCCACATGTCTTTTTGGTCT
GGAGTAAAAGCAGCGAGAGCCAAACTCATACCGTTTCGACATAATTCAATCGATTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATTATTGCAGTAGACTCTATTTATAGTACGCTAGGCACAATTAGCCCATTGGCTGACTATGCGGAAATTG
CAAGAAAATTTAAATGCTTGCTCATCGTCGATGAATCTCATTCATTAGGGACTCATGGGCCGCAAGGCAAAGGGATGGTT
GCTAAACTGGGATTATCAAGCCAAATAGACCTCTTAACAGCAAGCTTGGCCAAAGCCTTTTCAGGACGAGGAGGACTCAT
TGCAGGAGATAGGAGACTGATAGAATATATAAGATATTCCTCTCTGCCTTCTATTTTCAGCTCTGCTTTAATGCCTCACG
ATTTGGCAGGATTTAGCACATCATTAGAAATTATTACGCAAGAAGAATGGAGAAGAAAAAAATTACAAACCAATGCTGCA
TTTTTACGGGAAGCCTTATCATGCCTGAGAATTAATATCGGGGGTAGTGAATCGCAAATAGTTCCTTTAATAACTGGAAG
CGAGGCTAATACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGAGCTCTTTGGAGCGGTATTCTGTTCGCCTGCCACCC
CTAAAAATAAATGTCTGATTCGTTTATCTATCGGCGCACATCACGAAAAATCGGATTTGCTCAGAGTTGTTGAGTGTCTG
GCCAATCTTGCAAGAAAAAGACCCGAAATGCCTTTGTTTAAAGGTAACTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.479

90.385

0.411