Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CJJRM3420_RS06465 Genome accession   NZ_CP017456
Coordinates   1262321..1262836 (-) Length   171 a.a.
NCBI ID   WP_002855725.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni str. RM3420     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1257321..1267836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM3420_RS06450 (CjjRM3420_1276) - 1257422..1259149 (-) 1728 WP_002856431.1 flagellin A -
  CJJRM3420_RS06455 (CjjRM3420_1277) - 1259232..1261058 (-) 1827 WP_002856576.1 motility associated factor glycosyltransferase family protein -
  CJJRM3420_RS06460 (CjjRM3420_1278) - 1261070..1262320 (-) 1251 WP_032581674.1 DUF2920 family protein -
  CJJRM3420_RS06465 (CjjRM3420_1279) ctsG 1262321..1262836 (-) 516 WP_002855725.1 type II secretion system protein Machinery gene
  CJJRM3420_RS06470 (CjjRM3420_1280) tsaD 1262837..1263844 (-) 1008 WP_002855919.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CJJRM3420_RS06475 (CjjRM3420_1281) - 1263841..1265235 (-) 1395 WP_070363983.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CJJRM3420_RS06480 (CjjRM3420_1282) dxr 1265237..1266307 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CJJRM3420_RS06485 (CjjRM3420_1283) cdsA 1266304..1267029 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  CJJRM3420_RS06490 (CjjRM3420_1284) - 1267038..1267376 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18659.50 Da        Isoelectric Point: 7.8499

>NTDB_id=168995 CJJRM3420_RS06465 WP_002855725.1 1262321..1262836(-) (ctsG) [Campylobacter jejuni subsp. jejuni str. RM3420]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVDFTSPSSNKACVILSKNENFKNL
ASKTYLLTGGR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=168995 CJJRM3420_RS06465 WP_002855725.1 1262321..1262836(-) (ctsG) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGTGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAGACTTTACGAGCCCTTCTAGCAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAACAGGAGGAAGGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.941

99.415

0.924