Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJJRM3420_RS05210 Genome accession   NZ_CP017456
Coordinates   1010723..1011274 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni str. RM3420     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1005723..1016274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJJRM3420_RS05175 (CjjRM3420_1020) - 1005913..1006338 (+) 426 WP_002856557.1 GNAT family N-acetyltransferase -
  CJJRM3420_RS05180 (CjjRM3420_1021) - 1006402..1007022 (+) 621 WP_002856358.1 NAD(P)H-dependent oxidoreductase -
  CJJRM3420_RS05185 (CjjRM3420_1022) - 1007022..1007627 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  CJJRM3420_RS05190 (CjjRM3420_1023) pgsA 1007752..1008288 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJJRM3420_RS05195 (CjjRM3420_1024) rseP 1008285..1009391 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  CJJRM3420_RS05200 (CjjRM3420_1025) - 1009384..1010250 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  CJJRM3420_RS05205 (CjjRM3420_1026) rpsF 1010337..1010714 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  CJJRM3420_RS05210 (CjjRM3420_1027) ssb 1010723..1011274 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  CJJRM3420_RS05215 (CjjRM3420_1028) rpsR 1011285..1011545 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJJRM3420_RS05220 (CjjRM3420_1029) lon 1011606..1013981 (-) 2376 WP_002856101.1 endopeptidase La -
  CJJRM3420_RS05225 (CjjRM3420_1030) - 1013998..1014645 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  CJJRM3420_RS05230 (CjjRM3420_1031) fliW 1014806..1015195 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJJRM3420_RS05235 (CjjRM3420_1032) proC 1015195..1015926 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  CJJRM3420_RS05240 (CjjRM3420_1033) ctsT 1015923..1016225 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=168980 CJJRM3420_RS05210 WP_002856575.1 1010723..1011274(+) (ssb) [Campylobacter jejuni subsp. jejuni str. RM3420]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=168980 CJJRM3420_RS05210 WP_002856575.1 1010723..1011274(+) (ssb) [Campylobacter jejuni subsp. jejuni str. RM3420]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTAAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372