Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   BSBS38_RS20595 Genome accession   NZ_CP017314
Coordinates   3890367..3892550 (+) Length   727 a.a.
NCBI ID   WP_069964424.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS38     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3885367..3897550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS20565 (BSBS38_04138) - 3887329..3887580 (-) 252 WP_014481429.1 hypothetical protein -
  BSBS38_RS20570 - 3887697..3888517 (+) 821 Protein_3997 SDR family oxidoreductase -
  BSBS38_RS20575 (BSBS38_04141) - 3888668..3888892 (-) 225 WP_069964420.1 hypothetical protein -
  BSBS38_RS20580 (BSBS38_04142) - 3888909..3889139 (-) 231 WP_069964421.1 hypothetical protein -
  BSBS38_RS20585 (BSBS38_04143) - 3889324..3889749 (-) 426 WP_069964422.1 DUF6773 family protein -
  BSBS38_RS20590 (BSBS38_04144) - 3889739..3889957 (-) 219 WP_069964423.1 helix-turn-helix transcriptional regulator -
  BSBS38_RS20595 (BSBS38_04146) comA/nlmT 3890367..3892550 (+) 2184 WP_069964424.1 peptidase domain-containing ABC transporter Regulator
  BSBS38_RS20600 (BSBS38_04147) - 3892551..3894020 (+) 1470 WP_069964425.1 HlyD family efflux transporter periplasmic adaptor subunit -
  BSBS38_RS20605 (BSBS38_04149) yxbF 3894341..3895483 (-) 1143 WP_069964426.1 TetR/AcrR family transcriptional regulator -
  BSBS38_RS20610 (BSBS38_04150) aldX 3895624..3896961 (+) 1338 WP_069964427.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 81967.78 Da        Isoelectric Point: 8.9393

>NTDB_id=168302 BSBS38_RS20595 WP_069964424.1 3890367..3892550(+) (comA/nlmT) [Bacillus subtilis strain BS38]
MFFNRYHCVRQLDQKDCGAACLSTIAKHYGSKLSLAYIRDIAGTDTQGTSALGMVKAAEQLGFTAKAVRAEHTAFAQSIT
LPAIAHIIIDQQLLHYVVIHKISKDKIIIADPGKGLVTYQKDDFFKIWTGILILLAPTETYKKQTETSNISADIFRLILQ
QKSLIIHTVLASFIITIFGILGTFYFQTIIDQILPNGLSNTLHILSIGLLIMYLFKVFLIGFRQYLMILLGQKLSISIMF
GYFQHVLTLPMKFFSNRKIGEIISRFTDANKVIDAVVSASLSVILDTIMLIMVGIFLYLQNTTLFLITLAFIPFYILTVW
IFIKPYENINNTEMENNAQLTSKIVETLNGIETVKAYNAEYMMSFETEKRFVKYLRSAFKHGVIDNLQSSIKMFLDLASG
ALILWIGSTQVMKGTLTIGQLITYNALLTYFLNPLQNIIGLQSKLQSASVASKRLGEILKLEPELKEKEARITSTSSITG
PLSFNKINFRYGTRKLILKDITLHIQKGEKVAFVGESGSGKSTLTKLLMKFYTAESGEVLINGYHINDIHTNTLRESISY
IPQESHFIQGSILENLLLGNSGSFTFEEIIEVCKQTNVHNFVNDLPMRYDTLVEENGSNLSGGQKQRLAIARALLRKPNI
LIMDESTSNLDTTTEQGISKMIYSQTVDVTTIIIAHRLSTIMNCDKIFVMEKGEIIEYGDHNDLLKKKGKYYELWENQMP
SREMVTI

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=168302 BSBS38_RS20595 WP_069964424.1 3890367..3892550(+) (comA/nlmT) [Bacillus subtilis strain BS38]
ATGTTTTTTAATAGATATCATTGTGTACGACAACTTGATCAAAAAGATTGTGGAGCAGCCTGCCTATCAACAATTGCAAA
ACACTATGGCTCAAAGCTCTCTCTAGCTTATATACGTGACATTGCTGGAACTGATACACAAGGTACTAGTGCTCTTGGAA
TGGTAAAAGCCGCCGAACAGTTGGGGTTTACAGCAAAAGCTGTACGTGCAGAGCATACAGCTTTTGCTCAGTCCATTACT
CTTCCAGCAATTGCACATATTATTATAGATCAACAATTATTGCATTACGTTGTTATACATAAAATTAGTAAAGATAAGAT
TATCATTGCGGATCCTGGAAAAGGGCTCGTTACATATCAAAAAGATGATTTTTTTAAGATTTGGACAGGCATCTTAATAC
TTTTAGCACCTACTGAGACTTATAAAAAACAGACCGAGACAAGTAATATAAGTGCCGATATTTTCAGGTTGATTCTTCAG
CAAAAATCGTTGATTATCCATACAGTTTTAGCATCCTTTATTATTACCATCTTCGGGATCCTCGGTACTTTTTACTTTCA
GACGATCATCGATCAAATACTGCCTAATGGATTAAGTAACACATTACATATTCTTTCAATCGGCCTTTTGATTATGTATT
TATTTAAGGTTTTCTTAATAGGTTTTAGGCAATACCTAATGATTCTCCTAGGTCAAAAATTAAGTATCTCCATTATGTTT
GGATACTTTCAACATGTGCTTACTTTGCCAATGAAATTTTTCAGCAATCGAAAAATTGGCGAAATTATATCCAGATTTAC
TGATGCTAATAAAGTGATCGACGCGGTTGTCAGTGCATCACTTTCGGTCATACTCGATACCATTATGCTTATTATGGTTG
GTATTTTCTTATATTTGCAGAATACTACTTTATTTCTCATCACATTGGCTTTCATACCTTTTTATATTTTGACGGTTTGG
ATTTTTATAAAACCCTACGAAAATATAAATAACACAGAAATGGAAAACAATGCTCAGCTGACTTCAAAGATTGTTGAGAC
GCTTAACGGCATCGAAACTGTTAAAGCATATAATGCAGAATATATGATGTCATTTGAAACAGAAAAAAGATTTGTAAAAT
ACTTACGATCAGCTTTTAAACATGGAGTTATTGATAATCTTCAGAGTTCCATAAAAATGTTTTTGGATTTAGCAAGCGGT
GCATTGATATTGTGGATCGGATCAACTCAGGTCATGAAAGGCACCCTTACTATCGGTCAGCTTATTACATATAATGCCTT
ATTAACCTACTTCTTAAATCCTTTACAAAACATCATCGGCCTACAATCTAAGCTTCAATCAGCTTCTGTTGCGTCCAAAA
GGCTCGGAGAAATTCTAAAGCTAGAACCCGAATTAAAAGAGAAAGAGGCACGAATAACATCGACATCGTCAATTACAGGT
CCGCTTTCTTTTAATAAAATCAATTTTCGATACGGAACTCGAAAGCTCATCTTAAAAGATATTACACTGCACATTCAAAA
AGGAGAAAAGGTTGCCTTTGTTGGAGAGAGCGGTTCAGGGAAGTCTACTTTGACTAAGCTTTTAATGAAATTTTATACAG
CTGAATCGGGTGAGGTTTTAATCAATGGATATCATATAAATGATATCCACACCAACACCTTAAGAGAAAGTATAAGTTAT
ATCCCTCAAGAATCTCACTTTATTCAAGGATCAATTCTTGAAAACCTTTTGCTTGGGAACTCAGGAAGTTTTACCTTTGA
AGAGATTATAGAAGTATGCAAACAAACAAATGTACACAATTTTGTCAATGATTTACCAATGAGATACGATACTCTCGTTG
AGGAAAACGGGTCTAATTTATCTGGAGGCCAGAAGCAAAGACTTGCAATTGCCAGAGCATTATTAAGAAAACCTAACATT
CTCATAATGGATGAATCAACAAGCAATCTCGATACGACGACCGAACAGGGAATATCAAAGATGATTTACAGTCAGACTGT
CGATGTAACTACAATTATAATCGCTCATCGTTTAAGTACAATTATGAATTGCGACAAAATATTTGTCATGGAAAAGGGAG
AAATCATAGAGTATGGGGACCACAATGATTTATTGAAGAAAAAAGGGAAGTACTATGAGTTGTGGGAGAACCAAATGCCA
TCGAGAGAGATGGTGACAATTTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(498-648)

ABC transporter transmembrane region (ABC_membrane)

(168-435)

Peptidase C39 family (Peptidase_C39)

(6-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

42.222

99.037

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

41.841

98.624

0.413
  comA Streptococcus mitis NCTC 12261

41.423

98.624

0.409
  comA Streptococcus mitis SK321

41.423

98.624

0.409
  comA Streptococcus pneumoniae D39

41.283

98.624

0.407
  comA Streptococcus pneumoniae Rx1

41.283

98.624

0.407
  comA Streptococcus pneumoniae R6

41.283

98.624

0.407
  comA Streptococcus pneumoniae TIGR4

41.144

98.624

0.406