Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AL539_RS20485 Genome accession   NZ_CP014054
Coordinates   598868..599965 (-) Length   365 a.a.
NCBI ID   WP_104976231.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 593868..604965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS20470 (AL539_02605) - 594447..595505 (-) 1059 WP_005373588.1 HlyD family secretion protein -
  AL539_RS20475 (AL539_02610) slyA 595541..595996 (-) 456 WP_017635177.1 transcriptional regulator SlyA -
  AL539_RS20480 (AL539_02615) luxQ 596292..598868 (-) 2577 WP_104976230.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AL539_RS20485 (AL539_02620) luxP 598868..599965 (-) 1098 WP_104976231.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AL539_RS20495 (AL539_02630) - 600307..600624 (-) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  AL539_RS20500 (AL539_02635) - 600621..601271 (-) 651 WP_005373594.1 YceH family protein -
  AL539_RS20505 (AL539_02640) - 601437..601640 (-) 204 WP_031777159.1 hypothetical protein -
  AL539_RS20510 (AL539_02645) - 601882..602196 (+) 315 WP_005373603.1 DUF496 family protein -
  AL539_RS20515 (AL539_02650) - 602318..603661 (+) 1344 WP_104976232.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41586.10 Da        Isoelectric Point: 6.4031

>NTDB_id=168110 AL539_RS20485 WP_104976231.1 598868..599965(-) (luxP) [Vibrio alginolyticus strain FDAARGOS_108]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFKLQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=168110 AL539_RS20485 WP_104976231.1 598868..599965(-) (luxP) [Vibrio alginolyticus strain FDAARGOS_108]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGTTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTAAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGATTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGACGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment