Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WH25_RS03800 Genome accession   NZ_CP017295
Coordinates   797996..798598 (-) Length   200 a.a.
NCBI ID   WP_008808581.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 792996..803598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS03785 (WH25_03785) - 793780..794340 (+) 561 WP_046165158.1 GNAT family N-acetyltransferase -
  WH25_RS03790 (WH25_03790) pepC 794419..795753 (+) 1335 WP_046165159.1 aminopeptidase C -
  WH25_RS03795 (WH25_03795) pbp1a 795865..798003 (-) 2139 WP_046165160.1 penicillin-binding protein PBP1A -
  WH25_RS03800 (WH25_03800) recU 797996..798598 (-) 603 WP_008808581.1 Holliday junction resolvase RecU Machinery gene
  WH25_RS03805 (WH25_03805) - 798664..799191 (+) 528 WP_046165161.1 DUF1273 domain-containing protein -
  WH25_RS03810 (WH25_03810) gpsB 799261..799611 (+) 351 WP_012000085.1 cell division regulator GpsB -
  WH25_RS03820 (WH25_03820) - 800152..801318 (+) 1167 WP_046165162.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  WH25_RS03825 (WH25_03825) - 801321..802727 (+) 1407 WP_046165200.1 cell division site-positioning protein MapZ family protein -
  WH25_RS03830 (WH25_03830) luxS 802789..803271 (-) 483 WP_046165163.1 S-ribosylhomocysteine lyase Regulator

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23190.76 Da        Isoelectric Point: 9.7509

>NTDB_id=167973 WH25_RS03800 WP_008808581.1 797996..798598(-) (recU) [Streptococcus gordonii strain IE35]
MVNYPHKLTSKNNIKKVKKETVDFANRGMTFEKMINDTNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYRGHYIDFEAKETRQKQSMPMKNFHAHQIEHMDQVLNQGGICFVLLHFSSLKETYLLPAPYLIEFYKIDKGG
KSMPLDYIQKHGYLIEQNILPSVPYLDIISKNLLGGHSNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=167973 WH25_RS03800 WP_008808581.1 797996..798598(-) (recU) [Streptococcus gordonii strain IE35]
ATGGTCAACTATCCGCATAAGCTTACATCTAAAAATAACATAAAAAAAGTGAAAAAAGAGACTGTCGATTTCGCTAATCG
GGGAATGACTTTCGAAAAAATGATTAACGACACCAATGACTATTATCTTAGCCGTGGATTAGCTGTTATTCATAAAAAGC
CTACACCTGTGCAAATTGTCAAAGTTGATTATCCTAAGCGAAGCCGTGCCAAGATTGTCGAGGCCTACTTTCGCCAAGCA
TCTACTACGGACTACTCGGGAGTTTACCGTGGGCATTATATTGACTTTGAAGCCAAGGAAACGCGGCAAAAACAATCCAT
GCCTATGAAGAACTTTCATGCACACCAGATTGAGCATATGGATCAAGTGCTCAATCAAGGCGGAATTTGCTTTGTCTTAC
TTCACTTTTCTAGCCTGAAGGAAACCTACCTCCTTCCTGCTCCCTACTTAATTGAGTTTTACAAGATTGATAAGGGTGGG
AAATCCATGCCCCTGGATTATATTCAGAAACATGGTTATCTCATTGAACAAAACATCCTTCCCAGCGTACCTTATCTTGA
TATAATCTCAAAAAATTTACTAGGTGGTCACTCTAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.254

100

0.495