Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   A4W87_RS08170 Genome accession   NZ_CP017273
Coordinates   1583978..1586275 (+) Length   765 a.a.
NCBI ID   WP_076631945.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1578978..1591275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W87_RS08140 (A4W87_08105) - 1579540..1580178 (-) 639 WP_231952326.1 pentapeptide repeat-containing protein -
  A4W87_RS08145 - 1580240..1580500 (-) 261 WP_331713297.1 DNA/RNA non-specific endonuclease -
  A4W87_RS08150 (A4W87_08110) - 1580501..1581037 (-) 537 WP_011374038.1 DNA/RNA non-specific endonuclease -
  A4W87_RS08155 (A4W87_08115) - 1581030..1582397 (-) 1368 WP_011374037.1 MATE family efflux transporter -
  A4W87_RS08160 - 1582367..1582588 (-) 222 WP_143457235.1 hypothetical protein -
  A4W87_RS08165 (A4W87_08120) trpS 1582606..1583622 (-) 1017 WP_011374036.1 tryptophan--tRNA ligase -
  A4W87_RS08170 (A4W87_08125) helD 1583978..1586275 (+) 2298 WP_076631945.1 RNA polymerase recycling motor HelD Machinery gene
  A4W87_RS08180 (A4W87_08135) - 1586483..1587364 (-) 882 WP_231953451.1 HAD family hydrolase -
  A4W87_RS08185 (A4W87_08140) - 1587524..1587739 (+) 216 WP_011374032.1 DUF2187 family protein -
  A4W87_RS09915 - 1587788..1588066 (-) 279 WP_350028374.1 YitT family protein -
  A4W87_RS09920 (A4W87_08145) - 1588046..1588638 (-) 593 Protein_1561 YitT family protein -
  A4W87_RS08200 (A4W87_08150) - 1588713..1589750 (-) 1038 Protein_1562 C69 family dipeptidase -

Sequence

Protein


Download         Length: 765 a.a.        Molecular weight: 87037.25 Da        Isoelectric Point: 4.6082

>NTDB_id=167748 A4W87_RS08170 WP_076631945.1 1583978..1586275(+) (helD) [Latilactobacillus sakei strain TMW 1.1396]
MLQEDTQQQEQARVDLTVDQVNQRLTVINQQLDNAYNETKDIEQRYGDTTKVNITEVDDRMETNAAVQQQKQLVAAAVEN
EKLLTSQQKRLTDLVDSPYFGRIDINEDGEEESLYIGTATFINEQDQFLVYDWRAPIASIYYNGTLGTVSYDTPNGPVKV
DLTLKRQFKIKNGQIEHLFDTNETVGDELLQAVLGQQSDEYMQNIVATIQKEQNDIIRDTTADLLIVQGVAGSGKTSAVL
QRIAFLLYHSRSHLEADQMVLFSPNRLFSHYISEVLPSLGEKNMRQVTMAEFLSHRFSGLQVETLFDRFEKDQASFPEMT
QAIRRFKESAPFMQQITDYVKQVSTQPLAFNDLYFEDRPFFTKAQINKIYLDLPHNMRPGDKFIATKNTLIKRLKRQINL
EVHLDWVAEKIDTLSDDDYRAIVGDREFDSGDLEQAFIAREIVQNYFADLYDAIYNDYFLDVYTEYQNFLRTACPAIIPV
AVWEAMIETVAQNNERHLVGLSDAAPILYLRDLLTDSGQNHSIQYLFVDEMQDYSIAQFVYLQHAFPNAKFTVLGDYAQD
VFTATYQAGNFIERLCAAFPKLKTNQISLTKSYRATAPITNFAKALLSKETALQAFSRDGRLPRVITATKEASINALTQE
IFHLQKRHATIAILTKDQQTARQLFASLTPDDQVTLISETTRSLPKGVLVLPLYLAKGLEFDAVIGYDISATTFGQSSDV
DLLYTLMTRAMHDLTLLGIGTLSPLITSLDPQYYQNITTTKETIA

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=167748 A4W87_RS08170 WP_076631945.1 1583978..1586275(+) (helD) [Latilactobacillus sakei strain TMW 1.1396]
ATGCTACAAGAAGATACGCAACAACAAGAACAAGCCCGTGTTGATTTAACGGTTGACCAAGTCAATCAACGGCTAACGGT
TATCAACCAGCAATTGGACAATGCCTATAATGAAACTAAAGATATTGAACAACGTTATGGTGATACTACCAAGGTCAATA
TTACGGAGGTCGATGACCGGATGGAAACCAATGCCGCCGTCCAACAGCAAAAACAACTAGTCGCAGCGGCCGTTGAAAAC
GAAAAACTCCTAACGTCACAACAAAAACGGCTAACGGATTTAGTCGACTCTCCTTATTTTGGTCGGATTGATATCAATGA
AGACGGTGAGGAAGAATCACTCTACATCGGGACCGCCACTTTTATCAACGAGCAAGACCAATTCTTGGTTTACGATTGGC
GAGCACCCATTGCTAGTATTTACTATAATGGCACATTAGGAACCGTCAGTTACGACACGCCTAATGGCCCCGTTAAAGTT
GATTTAACACTAAAACGACAGTTCAAGATTAAAAACGGTCAAATTGAACATCTTTTTGATACAAACGAAACAGTTGGCGA
CGAACTCCTGCAAGCCGTCCTCGGCCAACAAAGTGATGAGTACATGCAAAATATCGTTGCAACAATTCAAAAAGAACAAA
ATGATATTATCCGTGATACGACTGCCGATTTACTAATTGTCCAAGGCGTCGCTGGCAGCGGTAAAACCTCCGCTGTTTTA
CAACGCATCGCTTTCTTACTCTATCACAGTCGTAGTCACTTAGAAGCCGATCAAATGGTCCTTTTTTCACCTAATCGCTT
ATTCAGTCACTATATTTCTGAGGTGCTGCCTAGTTTAGGGGAAAAGAATATGCGCCAAGTGACGATGGCTGAATTTTTAA
GTCATCGTTTCTCGGGGCTTCAAGTTGAAACACTCTTCGATCGTTTTGAAAAAGACCAAGCGAGTTTCCCAGAAATGACG
CAAGCAATACGCCGCTTTAAAGAAAGTGCCCCCTTTATGCAACAAATTACGGATTATGTTAAACAGGTTTCTACACAGCC
ATTGGCCTTCAATGACCTCTACTTTGAAGATCGTCCGTTCTTCACAAAAGCGCAAATTAATAAAATTTATCTCGATCTCC
CACATAATATGCGTCCCGGTGATAAATTTATTGCCACTAAAAATACCCTCATTAAACGACTCAAACGCCAAATTAATTTA
GAAGTGCACCTTGATTGGGTCGCTGAAAAAATTGATACCTTATCAGATGATGACTACCGTGCCATCGTCGGTGATCGCGA
ATTTGATTCTGGCGATTTAGAACAAGCATTTATTGCCCGGGAAATTGTTCAAAATTATTTTGCCGATTTATACGATGCTA
TTTATAACGATTACTTTTTGGATGTGTATACTGAATATCAAAACTTCTTACGGACAGCTTGTCCGGCTATAATTCCGGTT
GCCGTTTGGGAAGCAATGATTGAAACAGTCGCTCAAAATAATGAACGCCACCTCGTCGGTTTAAGTGACGCAGCGCCAAT
TCTGTATCTCCGTGATTTATTAACCGATAGTGGTCAAAATCACAGCATTCAATACTTATTCGTCGATGAGATGCAAGATT
ATAGCATTGCGCAATTCGTTTATCTCCAGCATGCTTTCCCGAACGCTAAATTCACCGTGCTCGGCGATTACGCGCAGGAC
GTCTTTACCGCTACTTATCAAGCCGGTAATTTCATTGAACGCCTCTGCGCGGCTTTTCCAAAACTAAAAACTAACCAAAT
TAGTTTGACGAAGAGCTATCGCGCGACTGCCCCCATCACGAATTTCGCAAAAGCCTTATTGTCTAAAGAAACAGCCTTGC
AAGCCTTTAGTCGTGATGGACGGCTCCCTCGTGTCATCACAGCCACTAAGGAAGCTAGTATAAATGCCTTAACGCAAGAA
ATTTTCCACCTACAAAAACGGCATGCAACTATCGCCATTTTAACCAAGGATCAACAAACGGCGCGCCAACTTTTCGCCAG
CCTGACTCCCGATGATCAGGTAACACTCATCTCCGAAACCACCCGCTCATTGCCAAAAGGTGTTTTAGTATTACCGTTAT
ATCTCGCTAAAGGTCTCGAATTCGATGCTGTCATTGGTTACGACATTTCAGCAACCACCTTTGGCCAATCAAGTGACGTT
GACTTACTCTACACACTGATGACGCGTGCCATGCACGACTTAACCTTGTTGGGAATTGGTACCCTCAGCCCACTCATTAC
TAGCCTCGATCCTCAATACTACCAAAACATTACAACCACTAAGGAAACGATTGCCTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(689-736)

AAA domain (AAA_19)

(213-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

37.113

100

0.376