Detailed information NTG0167698

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AL536_RS41035
• Genome accession: NZ_CP014035
• Coordinates: 2278683..2279669 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain ATCC 33809
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2273683..2284669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL536_RS41015 (AL536_18115)	recX	2273727..2274185 (-)	459	WP_061056876.1	recombination regulator RecX	-
AL536_RS41020 (AL536_18120)	recA	2274255..2275307 (-)	1053	WP_020330433.1	recombinase RecA	Machinery gene
AL536_RS41025 (AL536_18125)	pncC	2275480..2275968 (-)	489	WP_061056877.1	nicotinamide-nucleotide amidase	-
AL536_RS41030 (AL536_18130)	mutS	2276053..2278614 (+)	2562	WP_020429690.1	DNA mismatch repair protein MutS	-
AL536_RS41035 (AL536_18135)	rpoS	2278683..2279669 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
AL536_RS41040 (AL536_18140)	nlpD	2279741..2280676 (-)	936	WP_061056878.1	murein hydrolase activator NlpD	-
AL536_RS41045 (AL536_18145)	-	2280676..2281302 (-)	627	WP_020429685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AL536_RS41050 (AL536_18150)	surE	2281295..2282062 (-)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
AL536_RS41055 (AL536_18155)	truD	2282055..2283101 (-)	1047	WP_061056879.1	tRNA pseudouridine(13) synthase TruD	-
AL536_RS41060 (AL536_18160)	ispF	2283133..2283609 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AL536_RS41065 (AL536_18165)	ispD	2283612..2284322 (-)	711	WP_061056880.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AL536_RS41070 (AL536_18170)	ftsB	2284319..2284600 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=167698 AL536_RS41035 WP_020429689.1 2278683..2279669(-) (rpoS) [Vibrio fluvialis strain ATCC 33809]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=167698 AL536_RS41035 WP_020429689.1 2278683..2279669(-) (rpoS) [Vibrio fluvialis strain ATCC 33809]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAACAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGCCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTGTTAACCGCCGAAGAAGAAGTACTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATTGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGTAATCG
TGGCCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGTACCATT
CGTTTACCGATTCATGTGGTGAAAGAGCTGAATATTTACCTGCGTACTGCACGTGAACTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGTTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGCTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTCGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGCCGTCTGAGAGAGATCCTGATGAAACAAGGCCTGAATATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887