Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W86_RS01495 Genome accession   NZ_CP017272
Coordinates   317731..319524 (+) Length   597 a.a.
NCBI ID   WP_016264574.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 312731..324524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS01475 (A4W86_01455) rpsN 313354..313623 (+) 270 WP_011373976.1 30S ribosomal protein S14 -
  A4W86_RS01480 (A4W86_01460) - 313973..315148 (+) 1176 WP_016264571.1 multidrug effflux MFS transporter -
  A4W86_RS01485 (A4W86_01465) - 315201..315872 (-) 672 WP_016264572.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  A4W86_RS01490 (A4W86_01470) - 316015..317727 (+) 1713 WP_016264573.1 ABC transporter ATP-binding protein -
  A4W86_RS01495 (A4W86_01475) rcrQ 317731..319524 (+) 1794 WP_016264574.1 ABC transporter ATP-binding protein Regulator
  A4W86_RS01500 (A4W86_01480) - 319701..321749 (-) 2049 WP_035147362.1 UvrD-helicase domain-containing protein -
  A4W86_RS01505 (A4W86_01485) - 322192..322989 (-) 798 WP_016264576.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 66916.92 Da        Isoelectric Point: 5.6404

>NTDB_id=167613 A4W86_RS01495 WP_016264574.1 317731..319524(+) (rcrQ) [Latilactobacillus sakei strain TMW 1.1239]
MKEFKRAMVFFYHYLKRYKPSFAIILVMTVFATYLQVKAPEYIGDALNELVKYATKFQVLKAQHLPTSGASKDAFIDVIV
SLVLFYVLSSAATFVSSAAFSRVNALSTNRMRIGLFNKLQKMQIKYFDRHSDGDILSRFTSDLDNIYNAMNQVLSQLVSG
TALLIGLLIMMFRKDTQLAWVTIASVPISFILAWIIINKAQKYVNVQQDEVGKLNGYINEKITGQKVIITNSLQAETIDG
FVEHNESVRKATLKGQIYSGMIFPLMQGMSLVNTAIVIFFGSWLAVNGDIKKSVALGLVVTFVQYSQQFYNQIAQLSSSY
SMIQLAITGARRVNEVFDEDDEIRPTDGQQFNGIERSVTMEHVDFSYLPGKQILHDVNIEVDKGQMIALVGPTGSGKTTV
MNLMNRFYDVDQGAVKIDGVDIRDMDLDTLRSHVGIVLQESVLFAGTIRDNIVFGKPDATDDEVIAAAQQAHIHDFIMTL
EDGYQTKVSEEDNVFSTGQKQLISIARTIITDPALLILDEATSNVDTVTESHIQKAMENVIQGRTSFVIAHRLKTILNAD
RIIVLKDGRIIEEGNHQELLAQEGFYAELYNNQFVFE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=167613 A4W86_RS01495 WP_016264574.1 317731..319524(+) (rcrQ) [Latilactobacillus sakei strain TMW 1.1239]
ATGAAAGAATTTAAACGTGCCATGGTCTTTTTCTACCATTATTTAAAACGCTATAAACCATCTTTTGCGATTATCCTTGT
GATGACCGTCTTTGCCACTTATTTACAAGTCAAGGCGCCCGAATATATTGGGGATGCACTGAATGAACTGGTTAAATACG
CCACGAAGTTTCAGGTTTTAAAAGCCCAGCATTTACCAACCAGTGGGGCTTCTAAAGATGCTTTTATTGATGTCATTGTG
TCGTTAGTCCTTTTTTATGTCTTGAGTTCAGCGGCAACCTTTGTCTCAAGCGCCGCTTTTTCACGCGTCAATGCGTTATC
GACCAACCGGATGCGGATTGGGTTATTCAATAAATTACAAAAGATGCAGATTAAATATTTTGATCGTCATTCAGATGGCG
ATATCCTCAGCCGTTTTACGAGTGATTTAGATAATATTTATAACGCGATGAACCAAGTGTTAAGTCAATTAGTGTCGGGA
ACGGCCTTGTTGATTGGTTTGTTAATTATGATGTTTAGAAAAGATACCCAATTGGCGTGGGTTACAATCGCGTCAGTGCC
AATTTCGTTTATTTTAGCGTGGATCATTATCAACAAAGCGCAAAAATACGTCAATGTGCAACAAGATGAAGTGGGTAAGT
TAAATGGTTATATCAATGAAAAAATCACAGGGCAAAAAGTGATTATTACCAACAGCCTACAAGCTGAAACAATTGACGGC
TTTGTTGAACATAATGAAAGTGTCCGGAAAGCAACCTTGAAAGGCCAAATTTATTCAGGGATGATTTTCCCATTGATGCA
AGGGATGTCACTGGTTAATACGGCGATCGTGATCTTCTTTGGGAGCTGGCTAGCGGTCAACGGGGATATCAAAAAATCCG
TTGCTTTAGGATTAGTCGTGACTTTCGTGCAATATTCACAACAATTCTATAATCAAATTGCGCAACTCTCATCAAGTTAC
AGCATGATTCAATTGGCAATTACCGGTGCGCGCCGGGTCAACGAAGTCTTTGATGAAGATGATGAAATTCGTCCAACTGA
TGGACAACAATTCAACGGAATTGAACGTTCAGTAACGATGGAACATGTTGATTTTAGTTACTTACCAGGCAAACAAATCC
TGCACGACGTGAATATTGAGGTTGATAAGGGCCAAATGATTGCGTTGGTTGGACCAACTGGCTCTGGTAAGACGACGGTC
ATGAACTTGATGAACCGGTTCTATGATGTGGATCAAGGCGCCGTTAAGATTGACGGCGTTGATATCCGTGACATGGATTT
AGACACATTGCGGTCACACGTGGGGATTGTTCTTCAAGAATCAGTCTTATTTGCAGGGACGATTCGCGATAACATCGTCT
TTGGGAAACCAGATGCGACTGATGATGAAGTGATTGCAGCGGCGCAACAAGCGCACATTCACGATTTCATCATGACGTTG
GAAGATGGCTATCAAACGAAGGTTAGCGAAGAAGACAACGTCTTTAGTACGGGTCAAAAACAATTGATCAGTATTGCGCG
GACGATTATCACGGATCCAGCGCTCTTGATTTTAGATGAAGCAACAAGTAACGTTGATACGGTGACTGAAAGCCATATCC
AAAAAGCAATGGAAAATGTGATTCAGGGTCGGACTAGTTTTGTGATCGCCCATCGTTTGAAAACCATCTTAAATGCGGAT
CGGATTATCGTTTTAAAAGATGGCCGAATTATCGAAGAAGGCAATCATCAAGAATTACTAGCACAAGAAGGCTTCTACGC
AGAATTGTATAACAATCAATTTGTATTTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(26-311)

ABC transporter (ABC_tran)

(374-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.803

97.99

0.38