Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   A4W86_RS00625 Genome accession   NZ_CP017272
Coordinates   124996..127287 (+) Length   763 a.a.
NCBI ID   WP_016264411.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.1239     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119996..132287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W86_RS00600 (A4W86_00595) - 120369..120827 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  A4W86_RS00605 (A4W86_00600) - 121201..122102 (-) 902 Protein_120 proline-specific peptidase family protein -
  A4W86_RS00610 (A4W86_00605) - 122176..124014 (-) 1839 WP_016264408.1 cation:proton antiporter family protein -
  A4W86_RS00615 (A4W86_00610) crcB 124151..124558 (+) 408 WP_016264409.1 fluoride efflux transporter CrcB -
  A4W86_RS00620 (A4W86_00615) - 124555..124902 (+) 348 WP_016264410.1 CrcB family protein -
  A4W86_RS00625 (A4W86_00620) helD 124996..127287 (+) 2292 WP_016264411.1 RNA polymerase recycling motor HelD Machinery gene
  A4W86_RS00630 (A4W86_00625) coaA 127395..128324 (+) 930 WP_016264412.1 type I pantothenate kinase -
  A4W86_RS00635 (A4W86_00630) guaA 128491..130044 (+) 1554 WP_016264413.1 glutamine-hydrolyzing GMP synthase -
  A4W86_RS00640 (A4W86_00635) - 130184..131551 (+) 1368 WP_251950823.1 hypothetical protein -
  A4W86_RS00645 (A4W86_00640) - 131607..132269 (-) 663 WP_251908104.1 energy-coupling factor transporter transmembrane component T -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87801.79 Da        Isoelectric Point: 6.3693

>NTDB_id=167608 A4W86_RS00625 WP_016264411.1 124996..127287(+) (helD) [Latilactobacillus sakei strain TMW 1.1239]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHISEVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQELTKMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDELSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=167608 A4W86_RS00625 WP_016264411.1 124996..127287(+) (helD) [Latilactobacillus sakei strain TMW 1.1239]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTCAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACGCCATACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGGTTAGGCTCATTTACAGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAGCGTCAATTTTTGATTGAAGATGGTCAAATTAAGGCCTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCTGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACCGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGCATCGCGTTTTTACTCTATCGCTATCGGGGCAATTTAGATTCTAGCCAAGTGATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGCGAACAAAATATGATTCAAATGACTTACTTCCAATATG
TGGCGCGCCGGTTACCAAACATGGCGGTCCAGAGCCTTTTTGATCAATTCGAAACACCGGTTAACGAAACTGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCCGTTAAAAAATACGCTGCACATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTGATTACGAAGGAACACATCAGCGAGGTTTATTACCGGTTTAATGAAA
ACTACCATCTCGGCAATCGATTAGATGCGACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTCGATCACGAAACT
AAGGCCGACTGGGTGACTGAGCAAGCCGAGAATATGAGTGATGAAGAAATCCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGTGATGCTGAAAGCAAGTTTATTGCTAAGCAGATCGTGCTAGAAGCGTTCAAACCCGTTCGCCGGTCTATTCAAC
GCAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGAGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTCGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGCGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCACTTCCCTAAGGCGCGCTTCACATTATTGGGCGAT
TTGAATCAAGCGATTTTCACTAAAGGCAACAGCACAAATCTCTTGCAACAAGTCCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACACGTTCATACCGGTCAACGCAACAAGTGACCGACTTTACCAAAGGCTTATTAAAAGGTGGCC
AAGCCATCGAAGCCTTCAACCGAGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTTAACCGCCAATTAGCCGCAAATGAAGCGGATAAATTATCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGA
ATTGACGAAGATGCTCAAGGAAACGGGAACCAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGTTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGGCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGATGAACT
CTCACCACTGATTGATAACGTCGATCCAGAAAAATATACATTAACAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.501

100

0.391