Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AL533_RS14290 Genome accession   NZ_CP014019
Coordinates   2964669..2965079 (-) Length   136 a.a.
NCBI ID   WP_083009184.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS_129     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2959669..2970079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL533_RS14260 (AL533_14260) - 2959754..2960023 (-) 270 WP_021510640.1 HPr family phosphocarrier protein -
  AL533_RS14265 (AL533_14265) rapZ 2960020..2960871 (-) 852 WP_002054547.1 RNase adapter RapZ -
  AL533_RS14270 (AL533_14270) panC 2960894..2961742 (-) 849 WP_002054580.1 pantoate--beta-alanine ligase -
  AL533_RS14275 (AL533_14275) panB 2961746..2962555 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AL533_RS14280 (AL533_14280) folK 2962601..2963083 (-) 483 WP_083009183.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AL533_RS14285 (AL533_14285) pcnB 2963080..2964543 (-) 1464 WP_004710567.1 polynucleotide adenylyltransferase PcnB -
  AL533_RS14290 (AL533_14290) comEA 2964669..2965079 (-) 411 WP_083009184.1 ComEA family DNA-binding protein Machinery gene
  AL533_RS14295 (AL533_14295) mazG 2965048..2965854 (-) 807 WP_083009185.1 nucleoside triphosphate pyrophosphohydrolase -
  AL533_RS14300 (AL533_14300) - 2965967..2966740 (+) 774 WP_083009186.1 SDR family oxidoreductase -
  AL533_RS14305 (AL533_14305) - 2966786..2969092 (-) 2307 WP_002054537.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15510.85 Da        Isoelectric Point: 10.2944

>NTDB_id=167304 AL533_RS14290 WP_083009184.1 2964669..2965079(-) (comEA) [Acinetobacter nosocomialis strain FDAARGOS_129]
MRYSMILWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKSSHSYGSKISQTNSLNDSTGQIHLNQ
ATVNEFRQLKGIGEKKAQAIVEYRQKNGGFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=167304 AL533_RS14290 WP_083009184.1 2964669..2965079(-) (comEA) [Acinetobacter nosocomialis strain FDAARGOS_129]
ATGCGATACAGCATGATACTTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGTGTGATTTCACCTTCGGT
TTTTGCTCAATCGTTTGATCAGAATTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGTCTTCTCATTCTTATGGTTCTAAAATTTCTCAAACAAACAGTTTAAATGATTCTACTGGGCAGATTCATTTAAATCAG
GCGACTGTAAATGAGTTTCGGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTGGAATACAGACAAAAGAA
TGGTGGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGACCCGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

86.765

100

0.868
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397

Multiple sequence alignment