Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BL1202_RS10125 Genome accession   NZ_CP017247
Coordinates   1971042..1971473 (+) Length   143 a.a.
NCBI ID   WP_044790011.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL1202     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966042..1976473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1202_RS10105 (BL1202_02073) - 1966088..1967008 (+) 921 WP_021837473.1 dipeptidase -
  BL1202_RS10110 (BL1202_02074) tdh 1967133..1968176 (+) 1044 WP_085959523.1 L-threonine 3-dehydrogenase -
  BL1202_RS10115 (BL1202_02075) - 1968192..1969367 (+) 1176 WP_009328481.1 glycine C-acetyltransferase -
  BL1202_RS10120 (BL1202_02076) miaB 1969511..1971040 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BL1202_RS10125 (BL1202_02077) ymcA 1971042..1971473 (+) 432 WP_044790011.1 RicAFT regulatory complex protein RicA family protein Regulator
  BL1202_RS10130 (BL1202_02078) cotE 1971716..1972264 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  BL1202_RS10135 (BL1202_02079) hexA 1972375..1974984 (+) 2610 WP_034291576.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16045.30 Da        Isoelectric Point: 5.0656

>NTDB_id=167217 BL1202_RS10125 WP_044790011.1 1971042..1971473(+) (ymcA) [Bacillus licheniformis strain BL1202]
MTLYTKKEIVAKARELAKMIAETEEVEFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=167217 BL1202_RS10125 WP_044790011.1 1971042..1971473(+) (ymcA) [Bacillus licheniformis strain BL1202]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
ATTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.014

100

0.86