Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   A7J08_RS05155 Genome accession   NZ_CP017088
Coordinates   1020736..1021404 (+) Length   222 a.a.
NCBI ID   WP_172064090.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1015736..1026404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS10590 - 1016274..1016555 (+) 282 WP_301178351.1 hypothetical protein -
  A7J08_RS05130 (A7J08_04965) - 1016955..1017251 (+) 297 WP_148115762.1 lactococcin 972 family bacteriocin -
  A7J08_RS05135 (A7J08_04970) - 1017409..1019427 (+) 2019 Protein_943 DUF1430 domain-containing protein -
  A7J08_RS05140 (A7J08_04975) - 1019429..1020058 (+) 630 WP_105148459.1 putative bacteriocin export ABC transporter -
  A7J08_RS05145 (A7J08_04980) relB 1020202..1020441 (+) 240 WP_015646833.1 type II toxin-antitoxin system RelB family antitoxin -
  A7J08_RS05150 (A7J08_04985) - 1020431..1020697 (+) 267 WP_105139425.1 type II toxin-antitoxin system RelE/ParE family toxin -
  A7J08_RS05155 (A7J08_04990) braR 1020736..1021404 (+) 669 WP_172064090.1 response regulator transcription factor Regulator
  A7J08_RS05160 (A7J08_04995) - 1021401..1022342 (+) 942 WP_148115763.1 sensor histidine kinase -
  A7J08_RS05165 (A7J08_05000) - 1022417..1023925 (+) 1509 WP_053867315.1 phosphoglucomutase -
  A7J08_RS05170 (A7J08_05005) xerS 1023995..1025065 (-) 1071 WP_024397884.1 tyrosine recombinase XerS Machinery gene
  A7J08_RS05175 (A7J08_05010) - 1025232..1025573 (-) 342 Protein_951 adenylyl-sulfate kinase -
  A7J08_RS05180 (A7J08_05015) - 1025632..1026372 (-) 741 WP_148115764.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25566.36 Da        Isoelectric Point: 4.7677

>NTDB_id=166027 A7J08_RS05155 WP_172064090.1 1020736..1021404(+) (braR) [Streptococcus suis strain SRD478]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKIL
STLLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=166027 A7J08_RS05155 WP_172064090.1 1020736..1021404(+) (braR) [Streptococcus suis strain SRD478]
ATGATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATCGTCCAACTCTTGAAGCAGCATTTGGGAAAATC
TTATCAAGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGG
ACATTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATC
TCCTCTAGCGATGATGAGATGAATGCGGTCATGGCTATGAACATGGGAGGCGATGATTTTGTTTCTAAGCCTTTTTCACT
GGGAATTTTAGATGCCAAAATCGGCGCCTTCTTACGTCGAGTCAATCAATTCAGCAAATCAACTGACTTGTCTATCGACC
AATTCCAGCTTAGTTTGGATGGGCGTTTTTCAAGCGAATCGGAACAGGTTCAATTGTCTCCTACAGAAACCAAGATTTTA
TCCACCTTACTAGAACGACAAGGGCAGATTGTCAGTAAGGATGAACTCTTGGAAAAACTCTGGGAGAATGAAGAATTTAT
CGACCAGAATACGCTCAATGTGAACATGACTCGTCTGCGTAAGAAGGTGAGTGAAGTTGGATTTGACCGTATTCATACTG
TTCGTGGCGTGGGGTACCTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.182

99.099

0.477