Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   BGL51_RS05200 Genome accession   NZ_CP017064
Coordinates   963433..964503 (-) Length   356 a.a.
NCBI ID   WP_014608300.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 958433..969503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGL51_RS05185 (BGL51_05130) pstB 959158..959916 (+) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -
  BGL51_RS05190 (BGL51_05135) phoU 959944..960597 (+) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  BGL51_RS05195 (BGL51_05140) - 960731..963271 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  BGL51_RS05200 (BGL51_05145) xerS 963433..964503 (-) 1071 WP_014608300.1 tyrosine recombinase XerS Machinery gene
  BGL51_RS05205 (BGL51_05150) - 964728..965717 (-) 990 WP_095559365.1 lipoate--protein ligase -
  BGL51_RS05210 (BGL51_05155) - 965900..966454 (+) 555 WP_198362538.1 hypothetical protein -
  BGL51_RS05215 - 966511..966939 (+) 429 WP_232505721.1 hypothetical protein -
  BGL51_RS05220 (BGL51_05165) glgP 967047..969311 (-) 2265 WP_095559367.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41519.67 Da        Isoelectric Point: 9.6822

>NTDB_id=165915 BGL51_RS05200 WP_014608300.1 963433..964503(-) (xerS) [Streptococcus thermophilus strain ST3]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=165915 BGL51_RS05200 WP_014608300.1 963433..964503(-) (xerS) [Streptococcus thermophilus strain ST3]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTGAATATGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826