Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BARD7_RS03675 Genome accession   NZ_CP016913
Coordinates   771289..772005 (+) Length   238 a.a.
NCBI ID   WP_065980935.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 766289..777005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS03645 (BARD7_00741) - 766468..766845 (+) 378 WP_065521592.1 DUF1992 domain-containing protein -
  BARD7_RS03650 (BARD7_00742) - 766855..767286 (-) 432 WP_065980933.1 Hsp20/alpha crystallin family protein -
  BARD7_RS03655 (BARD7_00743) - 767302..767544 (-) 243 WP_013351373.1 spore germination protein -
  BARD7_RS03660 (BARD7_00744) - 767559..767819 (-) 261 WP_007408496.1 spore germination protein -
  BARD7_RS03665 (BARD7_00745) treP 768089..769504 (+) 1416 WP_014469890.1 PTS system trehalose-specific EIIBC component -
  BARD7_RS03670 (BARD7_00746) treC 769580..771265 (+) 1686 WP_065980934.1 alpha,alpha-phosphotrehalase -
  BARD7_RS03675 (BARD7_00747) treR 771289..772005 (+) 717 WP_065980935.1 trehalose operon repressor Regulator
  BARD7_RS03680 (BARD7_00748) - 772138..772803 (+) 666 WP_065980936.1 NAD(P)H-dependent oxidoreductase -
  BARD7_RS03685 (BARD7_00749) - 772839..773600 (-) 762 WP_013351379.1 YibE/F family protein -
  BARD7_RS03690 (BARD7_00750) - 773597..774736 (-) 1140 WP_065980937.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27442.52 Da        Isoelectric Point: 7.3799

>NTDB_id=165261 BARD7_RS03675 WP_065980935.1 771289..772005(+) (treR) [Bacillus amyloliquefaciens strain RD7-7]
MKVNKYITIYKDMVQQIESGMRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LVSFKELSETLGKETKTTVHRLGLVPPPAEAAKELGTKADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEEELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=165261 BARD7_RS03675 WP_065980935.1 771289..772005(+) (treR) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAAGTGAATAAATATATCACAATCTATAAAGACATGGTGCAGCAAATCGAAAGCGGCATGCGGAAGGCTGAAGACGT
TCTCCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCAAGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGGTTTCCCGTCTCAGGC
CTGGTCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAAAACGACGGTTCACCGCCTCGGGCTGGTTCCGCC
TCCCGCCGAAGCCGCAAAAGAGCTTGGCACAAAGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGGCGGATTGACG
GAGAACACATTATTTTGGACAAGGATTACTTTGTGAAAAAGCACGTTCCTCTTTTGACGAAGGCGATTTGCGAAGATTCG
ATTTACGAGTATCTCGAAGAAGAACTCGGCCTGTCAATCAGCTACGCGCAAAAAGAAATTGTCGTGGAGCCGGCAGGGGA
AGAAGACCGAAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAATCGTGTGTTTTTGGAGGACACCA
GTCTCTTTCAGTATACGGAGAGCCGGCACAGGCTCGATAAATTTCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424