Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BARD7_RS02175 Genome accession   NZ_CP016913
Coordinates   464557..464991 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 459557..469991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS02145 (BARD7_00433) - 460221..461084 (+) 864 WP_065980733.1 SDR family oxidoreductase -
  BARD7_RS02150 (BARD7_00434) - 461097..461600 (+) 504 WP_065980734.1 D-lyxose/D-mannose family sugar isomerase -
  BARD7_RS02155 (BARD7_00435) - 461687..462310 (+) 624 WP_065980735.1 GNAT family N-acetyltransferase -
  BARD7_RS02160 (BARD7_00436) - 462317..462739 (+) 423 WP_013351046.1 pyridoxamine 5'-phosphate oxidase family protein -
  BARD7_RS02165 (BARD7_00437) - 463239..464048 (+) 810 WP_013351047.1 lipid II flippase Amj family protein -
  BARD7_RS02170 (BARD7_00438) - 464092..464382 (-) 291 WP_013351048.1 DUF3817 domain-containing protein -
  BARD7_RS02175 (BARD7_00439) lrpC 464557..464991 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  BARD7_RS02180 (BARD7_00440) - 465056..467242 (+) 2187 WP_065980736.1 DNA topoisomerase III -
  BARD7_RS02185 (BARD7_00441) - 467474..468559 (+) 1086 WP_065980737.1 lipoprotein YdaJ -
  BARD7_RS02190 (BARD7_00442) - 468540..469388 (+) 849 WP_065980738.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=165259 BARD7_RS02175 WP_003156263.1 464557..464991(+) (lrpC) [Bacillus amyloliquefaciens strain RD7-7]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=165259 BARD7_RS02175 WP_003156263.1 464557..464991(+) (lrpC) [Bacillus amyloliquefaciens strain RD7-7]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCTATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGGCAGCTTGAATCCTTCGGCGTCATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTTCCCGTTTCCTGTATTGTTGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799