Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   BEN15_RS08190 Genome accession   NZ_CP016877
Coordinates   1549949..1551019 (-) Length   356 a.a.
NCBI ID   WP_024009896.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1544949..1556019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS08175 (BEN15_08170) pstB 1545674..1546432 (+) 759 WP_002950746.1 phosphate ABC transporter ATP-binding protein PstB -
  BEN15_RS08180 (BEN15_08175) phoU 1546460..1547113 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  BEN15_RS08185 (BEN15_08180) - 1547247..1549787 (+) 2541 WP_065973193.1 M1 family metallopeptidase -
  BEN15_RS08190 (BEN15_08185) xerS 1549949..1551019 (-) 1071 WP_024009896.1 tyrosine recombinase XerS Machinery gene
  BEN15_RS08195 (BEN15_08190) - 1551244..1552233 (-) 990 WP_002950753.1 lipoate--protein ligase -
  BEN15_RS11820 - 1552422..1552769 (+) 348 WP_231107144.1 hypothetical protein -
  BEN15_RS11825 - 1552753..1553085 (+) 333 WP_231107145.1 hypothetical protein -
  BEN15_RS08210 (BEN15_08205) glgP 1553573..1555837 (-) 2265 WP_065973194.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.61 Da        Isoelectric Point: 9.6822

>NTDB_id=165075 BEN15_RS08190 WP_024009896.1 1549949..1551019(-) (xerS) [Streptococcus thermophilus strain KLDS 3.1003]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNVASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=165075 BEN15_RS08190 WP_024009896.1 1549949..1551019(-) (xerS) [Streptococcus thermophilus strain KLDS 3.1003]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGTGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTACTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATGTGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTGAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829

Multiple sequence alignment