Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   BEN15_RS06950 Genome accession   NZ_CP016877
Coordinates   1308783..1309430 (-) Length   215 a.a.
NCBI ID   WP_065973086.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain KLDS 3.1003     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1303783..1314430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN15_RS06935 (BEN15_06930) holA 1305532..1306566 (+) 1035 WP_065973085.1 DNA polymerase III subunit delta -
  BEN15_RS06940 (BEN15_06935) sodA 1306661..1307266 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  BEN15_RS06945 (BEN15_06940) - 1307363..1308742 (+) 1380 WP_082308138.1 serine hydrolase -
  BEN15_RS06950 (BEN15_06945) cclA/cilC 1308783..1309430 (-) 648 WP_065973086.1 prepilin peptidase Machinery gene
  BEN15_RS06955 (BEN15_06950) - 1309539..1310060 (+) 522 WP_065973087.1 Dps family protein -
  BEN15_RS06960 (BEN15_06955) - 1310149..1310586 (+) 438 WP_065973088.1 Fur family transcriptional regulator -
  BEN15_RS06965 (BEN15_06960) - 1310697..1310903 (+) 207 WP_022096801.1 YqgQ family protein -
  BEN15_RS06970 (BEN15_06965) - 1310896..1311864 (+) 969 WP_065973089.1 ROK family glucokinase -
  BEN15_RS06975 (BEN15_06970) typA 1312002..1313852 (+) 1851 WP_065973090.1 translational GTPase TypA -
  BEN15_RS06980 (BEN15_06975) - 1313872..1314144 (+) 273 WP_065973091.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24882.02 Da        Isoelectric Point: 8.3852

>NTDB_id=165069 BEN15_RS06950 WP_065973086.1 1308783..1309430(-) (cclA/cilC) [Streptococcus thermophilus strain KLDS 3.1003]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLHFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKKPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=165069 BEN15_RS06950 WP_065973086.1 1308783..1309430(-) (cclA/cilC) [Streptococcus thermophilus strain KLDS 3.1003]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACATTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAAACCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386

Multiple sequence alignment