Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AVM03_RS06395 Genome accession   NZ_CP013727
Coordinates   1430596..1431363 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1425596..1436363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS06375 (AVM03_06370) - 1425798..1426610 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  AVM03_RS06380 (AVM03_06375) ccpN 1426636..1427274 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  AVM03_RS06385 (AVM03_06380) glyS 1427375..1429414 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  AVM03_RS06390 (AVM03_06385) glyQ 1429407..1430294 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  AVM03_RS06395 (AVM03_06390) recO 1430596..1431363 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  AVM03_RS19515 - 1431400..1431543 (-) 144 WP_007408286.1 YqzL family protein -
  AVM03_RS06400 (AVM03_06395) era 1431699..1432604 (-) 906 WP_003152978.1 GTPase Era -
  AVM03_RS06405 (AVM03_06400) - 1432585..1432995 (-) 411 WP_003152976.1 cytidine deaminase -
  AVM03_RS06410 (AVM03_06405) - 1433119..1433493 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  AVM03_RS06415 (AVM03_06410) ybeY 1433474..1433947 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  AVM03_RS06420 (AVM03_06415) - 1433948..1436080 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=164472 AVM03_RS06395 WP_003152982.1 1430596..1431363(-) (recO) [Bacillus amyloliquefaciens strain MBE1283]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=164472 AVM03_RS06395 WP_003152982.1 1430596..1431363(-) (recO) [Bacillus amyloliquefaciens strain MBE1283]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment