Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RSJ11_RS07080 Genome accession   NZ_CP013701
Coordinates   1172916..1173869 (+) Length   317 a.a.
NCBI ID   WP_061328684.1    Uniprot ID   -
Organism   Clostridium sporogenes strain AM1195     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1167916..1178869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSJ11_RS07055 (RSJ11_07010) - 1168079..1168315 (+) 237 WP_003491496.1 SHOCT domain-containing protein -
  RSJ11_RS07060 (RSJ11_07015) - 1168568..1169269 (+) 702 WP_061328678.1 response regulator transcription factor -
  RSJ11_RS07065 (RSJ11_07020) - 1169269..1170675 (+) 1407 WP_061328679.1 sensor histidine kinase -
  RSJ11_RS07070 (RSJ11_07025) - 1170991..1171677 (-) 687 WP_061328681.1 DNA alkylation repair protein -
  RSJ11_RS07075 (RSJ11_07030) - 1171913..1172671 (-) 759 WP_061328682.1 helix-turn-helix domain-containing protein -
  RSJ11_RS07080 (RSJ11_07035) ceuB 1172916..1173869 (+) 954 WP_061328684.1 ABC transporter permease Machinery gene
  RSJ11_RS07085 (RSJ11_07040) - 1173859..1174809 (+) 951 WP_061328685.1 iron chelate uptake ABC transporter family permease subunit -
  RSJ11_RS07090 (RSJ11_07045) - 1174806..1175561 (+) 756 WP_061328686.1 ABC transporter ATP-binding protein -
  RSJ11_RS07095 (RSJ11_07050) - 1175631..1176575 (+) 945 WP_061328687.1 siderophore ABC transporter substrate-binding protein -
  RSJ11_RS07105 (RSJ11_07060) - 1176777..1177778 (+) 1002 WP_061328688.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34842.17 Da        Isoelectric Point: 10.1376

>NTDB_id=164161 RSJ11_RS07080 WP_061328684.1 1172916..1173869(+) (ceuB) [Clostridium sporogenes strain AM1195]
MKKRYLILALIILSICSIFIGVKDISFVDIFNSDDVKLKVLLISRIPRLISIIVVGGSMSIAGLIMQQISRNKFVSPDTA
STVDSAKLGILVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYLSLPIVVIAFIYANKFTVAGMGEDFSKNLGVNYKRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLYSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSTVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=164161 RSJ11_RS07080 WP_061328684.1 1172916..1173869(+) (ceuB) [Clostridium sporogenes strain AM1195]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TGTAGATATATTTAATTCAGATGATGTAAAGCTTAAGGTATTATTAATCAGTAGAATTCCAAGACTTATAAGTATTATTG
TAGTAGGAGGGAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCACCAGATACAGCT
TCAACTGTAGATAGCGCAAAACTTGGGATTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTCACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGCACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATAT
TTATACCACTTGTAGGTATAATGCTTGGGAATATAATAGATTCAATAACTACATTTTTTGCATATAAATATAATCTTATT
CAAAGTATTGCATCTTGGCTTCAAGGAGATTTTTCTTTAATTATTAAAGGAAATTATGAGCTTATATATCTGAGTCTACC
TATTGTAGTCATAGCTTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCTAAGAATTTAGGGG
TTAATTATAAGAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTGGTAGTTATTACTGTAGGAAAA
ATACCATTTTTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGAGATAATTTAAAAAATAGTCTTTATAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATACTAGGTAGGTTAGTTATTTATCCTTATGAAATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTACAGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.125

98.107

0.502

Multiple sequence alignment