Detailed information NTG0160726

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: HSISS4_RS09060
• Genome accession: NZ_CP013216
• Coordinates: 1963173..1963601 (-)
• Length: 142 a.a.
• NCBI ID: WP_253183813.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain HSISS4
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1958173..1968601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSISS4_RS09020 (HSISS4_01756)	-	1958301..1958747 (-)	447	WP_021144682.1	hypothetical protein	-
HSISS4_RS09025 (HSISS4_01757)	-	1958825..1959481 (-)	657	WP_002887011.1	CPBP family intramembrane glutamic endopeptidase	-
HSISS4_RS09030 (HSISS4_01758)	-	1959493..1959690 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
HSISS4_RS09035 (HSISS4_01759)	-	1959941..1961134 (-)	1194	WP_002885831.1	acetate kinase	-
HSISS4_RS09040 (HSISS4_01760)	comYH	1961191..1962147 (-)	957	WP_002885753.1	class I SAM-dependent methyltransferase	Machinery gene
HSISS4_RS09045 (HSISS4_01761)	comGG	1962192..1962509 (-)	318	WP_021144683.1	competence type IV pilus minor pilin ComGG	-
HSISS4_RS09050 (HSISS4_01762)	comYF	1962487..1962924 (-)	438	WP_021144684.1	competence type IV pilus minor pilin ComGF	Machinery gene
HSISS4_RS09055 (HSISS4_01763)	comGE	1962911..1963141 (-)	231	WP_021144685.1	competence type IV pilus minor pilin ComGE	-
HSISS4_RS09060 (HSISS4_01764)	comYD	1963173..1963601 (-)	429	WP_253183813.1	competence type IV pilus minor pilin ComGD	Machinery gene
HSISS4_RS09065 (HSISS4_01765)	comYC	1963561..1963887 (-)	327	WP_002885815.1	competence type IV pilus major pilin ComGC	Machinery gene
HSISS4_RS09070 (HSISS4_01766)	comYB	1963884..1964984 (-)	1101	WP_144429890.1	competence type IV pilus assembly protein ComGB	Machinery gene
HSISS4_RS09075 (HSISS4_01767)	comYA	1964866..1965807 (-)	942	WP_002885658.1	competence type IV pilus ATPase ComGA	Machinery gene
HSISS4_RS09080 (HSISS4_01768)	-	1965889..1966251 (-)	363	WP_021144688.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15713.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=160726 HSISS4_RS09060 WP_253183813.1 1963173..1963601(-) (comYD) [Streptococcus salivarius strain HSISS4]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLAKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=160726 HSISS4_RS09060 WP_253183813.1 1963173..1963601(-) (comYD) [Streptococcus salivarius strain HSISS4]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTTTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGGCCAAGGAT
AAAATCAGTAACGGAAAATCAAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAATATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.143	98.592	0.415
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387