Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BB405_RS18350 Genome accession   NZ_CP016546
Coordinates   3640517..3641032 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain O177:H21     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635517..3646032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB405_RS18305 (BB405_18305) csrA 3635969..3636154 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  BB405_RS18335 (BB405_18335) yqaB 3637747..3638313 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BB405_RS18340 (BB405_18340) yqaA 3638310..3638738 (+) 429 WP_001287457.1 YqaA family protein -
  BB405_RS18345 (BB405_18345) gshA 3638811..3640367 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BB405_RS18350 (BB405_18350) luxS 3640517..3641032 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  BB405_RS18355 (BB405_18355) emrB 3641096..3642634 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BB405_RS18360 (BB405_18360) emrA 3642651..3643823 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BB405_RS18365 (BB405_18365) emrR 3643950..3644480 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BB405_RS18370 (BB405_18370) ygaH 3644571..3644906 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BB405_RS18375 (BB405_18375) ygaZ 3644896..3645633 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=160639 BB405_RS18350 WP_001130207.1 3640517..3641032(+) (luxS) [Escherichia coli strain O177:H21]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=160639 BB405_RS18350 WP_001130207.1 3640517..3641032(+) (luxS) [Escherichia coli strain O177:H21]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731