Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ASU36_RS05450 Genome accession   NZ_CP013137
Coordinates   1095183..1096253 (-) Length   356 a.a.
NCBI ID   WP_000776413.1    Uniprot ID   -
Organism   Staphylococcus aureus strain XQ     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1090183..1101253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU36_RS05410 (ASU36_05410) gcvPA 1090360..1091706 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ASU36_RS05415 (ASU36_05415) gcvT 1091726..1092817 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  ASU36_RS05420 (ASU36_05420) - 1092976..1093500 (-) 525 WP_001015120.1 shikimate kinase -
  ASU36_RS05425 (ASU36_05425) - 1093490..1093636 (-) 147 WP_001789879.1 hypothetical protein -
  ASU36_RS05430 (ASU36_05430) comGF 1093733..1094230 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  ASU36_RS05435 (ASU36_05435) comGE 1094148..1094447 (-) 300 WP_000844415.1 hypothetical protein Machinery gene
  ASU36_RS05440 (ASU36_05440) comGD 1094434..1094880 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  ASU36_RS05445 (ASU36_05445) comGC 1094858..1095169 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ASU36_RS05450 (ASU36_05450) comGB 1095183..1096253 (-) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  ASU36_RS05455 (ASU36_05455) comGA 1096225..1097199 (-) 975 WP_058008079.1 competence type IV pilus ATPase ComGA Machinery gene
  ASU36_RS05460 (ASU36_05460) - 1097251..1097874 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ASU36_RS05465 (ASU36_05465) - 1097871..1098200 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ASU36_RS05470 (ASU36_05470) - 1098200..1099186 (-) 987 WP_000161315.1 ROK family glucokinase -
  ASU36_RS05475 (ASU36_05475) - 1099183..1099386 (-) 204 WP_000087561.1 YqgQ family protein -
  ASU36_RS05480 (ASU36_05480) - 1099367..1100830 (-) 1464 WP_058008080.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41475.94 Da        Isoelectric Point: 10.1030

>NTDB_id=160233 ASU36_RS05450 WP_000776413.1 1095183..1096253(-) (comGB) [Staphylococcus aureus strain XQ]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILISIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=160233 ASU36_RS05450 WP_000776413.1 1095183..1096253(-) (comGB) [Staphylococcus aureus strain XQ]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAATTTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATCCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAGTTAATTTACAACAAATTGAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAATTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment