Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BBP24_RS17580 Genome accession   NZ_CP016404
Coordinates   3560738..3561253 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 210221272     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3555738..3566253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP24_RS17555 (BBP24_17555) ygaZ 3556137..3556874 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  BBP24_RS17560 (BBP24_17560) ygaH 3556864..3557199 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  BBP24_RS17565 (BBP24_17565) emrR 3557290..3557820 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  BBP24_RS17570 (BBP24_17570) emrA 3557947..3559119 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  BBP24_RS17575 (BBP24_17575) emrB 3559136..3560674 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  BBP24_RS17580 (BBP24_17580) luxS 3560738..3561253 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  BBP24_RS17585 (BBP24_17585) gshA 3561403..3562959 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  BBP24_RS17590 (BBP24_17590) yqaA 3563032..3563460 (-) 429 WP_001287454.1 YqaA family protein -
  BBP24_RS17595 (BBP24_17595) yqaB 3563457..3564023 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  BBP24_RS17625 (BBP24_17625) csrA 3565481..3565666 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=160190 BBP24_RS17580 WP_001130211.1 3560738..3561253(-) (luxS) [Escherichia coli strain 210221272]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=160190 BBP24_RS17580 WP_001130211.1 3560738..3561253(-) (luxS) [Escherichia coli strain 210221272]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731