Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   A9Y60_RS02975 Genome accession   NZ_CP016016
Coordinates   564603..565076 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   B4RKG7
Organism   Neisseria gonorrhoeae strain 34530     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559603..570076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9Y60_RS02950 (A9Y60_02950) dnaB 560087..561490 (+) 1404 WP_012503477.1 replicative DNA helicase -
  A9Y60_RS15535 - 561484..561596 (-) 113 Protein_557 IS5/IS1182 family transposase -
  A9Y60_RS02955 (A9Y60_02955) pilH 561747..562409 (+) 663 WP_047916986.1 GspH/FimT family pseudopilin Machinery gene
  A9Y60_RS02960 (A9Y60_02960) pilV/pilI 562441..563055 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  A9Y60_RS02965 (A9Y60_02965) pilJ 563052..564014 (+) 963 WP_047921846.1 PilW family protein Machinery gene
  A9Y60_RS02970 (A9Y60_02970) pilK 563993..564601 (+) 609 WP_047921847.1 pilus assembly PilX family protein Machinery gene
  A9Y60_RS02975 (A9Y60_02975) pilL 564603..565076 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  A9Y60_RS02980 (A9Y60_02980) - 565146..565454 (-) 309 WP_003706588.1 AzlD family protein -
  A9Y60_RS02985 (A9Y60_02985) - 565451..566162 (-) 712 Protein_564 AzlC family ABC transporter permease -
  A9Y60_RS02990 (A9Y60_02990) dut 566328..566780 (+) 453 WP_003701071.1 dUTP diphosphatase -
  A9Y60_RS02995 (A9Y60_02995) dapC 566852..568039 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  A9Y60_RS03000 (A9Y60_03000) yaaA 568195..568974 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=158644 A9Y60_RS02975 WP_012503482.1 564603..565076(+) (pilL) [Neisseria gonorrhoeae strain 34530]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=158644 A9Y60_RS02975 WP_012503482.1 564603..565076(+) (pilL) [Neisseria gonorrhoeae strain 34530]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854