Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AOB58_RS04865 Genome accession   NZ_CP012968
Coordinates   987299..987862 (-) Length   187 a.a.
NCBI ID   WP_002508070.1    Uniprot ID   A0AAP7LV23
Organism   Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 982299..992862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOB58_RS04825 (AOB58_962) - 982580..983137 (-) 558 WP_064783036.1 GNAT family N-acetyltransferase -
  AOB58_RS04830 (AOB58_963) - 983312..983524 (+) 213 WP_046465163.1 TM2 domain-containing protein -
  AOB58_RS04835 (AOB58_964) - 983875..984129 (-) 255 WP_021339514.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  AOB58_RS04840 (AOB58_965) arsC 984602..984997 (-) 396 WP_021339513.1 arsenate reductase (thioredoxin) -
  AOB58_RS04845 (AOB58_966) arsB 985015..986307 (-) 1293 WP_021339512.1 arsenite efflux transporter membrane subunit ArsB -
  AOB58_RS04850 (AOB58_967) - 986307..986621 (-) 315 WP_021339511.1 metalloregulator ArsR/SmtB family transcription factor -
  AOB58_RS04865 (AOB58_968) comK/comK1 987299..987862 (-) 564 WP_002508070.1 competence protein ComK Regulator
  AOB58_RS04870 (AOB58_969) - 988115..988333 (+) 219 WP_002508071.1 IDEAL domain-containing protein -
  AOB58_RS04875 (AOB58_970) - 988434..989423 (-) 990 WP_002508072.1 lipoate--protein ligase -
  AOB58_RS04880 (AOB58_971) - 989624..989809 (+) 186 WP_002508073.1 DUF2187 family protein -
  AOB58_RS04885 (AOB58_972) - 989816..990418 (+) 603 WP_002508074.1 CPBP family glutamic-type intramembrane protease -
  AOB58_RS04890 (AOB58_973) - 990680..992188 (-) 1509 WP_021339510.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22058.46 Da        Isoelectric Point: 9.1458

>NTDB_id=158642 AOB58_RS04865 WP_002508070.1 987299..987862(-) (comK/comK1) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
MIQQYIIKKGDMALQPCNLSIGLNEGTCVLKYKEERDIVKERTHKIIDRSCRFYGSSYVFKKEDTMRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQTIRALKDKKCKITFVDNQTIVVNISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=158642 AOB58_RS04865 WP_002508070.1 987299..987862(-) (comK/comK1) [Staphylococcus sp. AntiMn-1 isolate deep-sea sediment of east Pacific Nodule Province]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCTCTTCAACCTTGTAATTTATCTATAGGACTAAATGAAGGTAC
TTGTGTATTAAAGTATAAGGAGGAGCGTGATATTGTAAAGGAACGGACACATAAGATTATAGATCGTTCATGTAGATTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGACACAATGAGAATTACAGGTATTAATAGTAAACCCCCGATATTATTCACT
CCATTATTTCCTACTTATTTTTTTCCTACACATTCAGACCGAAAAGAAGAAAACACTTGGATCAATATTCATTATGTACA
AACCATAAGAGCTTTAAAAGATAAAAAATGTAAAATCACATTTGTCGATAACCAGACTATAGTTGTTAATATTTCAGCAC
ACAGTATGCATCATCAATACTTAAATGGTATATATTATTACTATATGATGGATAGAGCAGCTAGGGTGGCTACTTTTGAT
CCTGAATCTCCTATAGACTATACGAAACCACAATTAAATATTTATGAAGCATTAGCAAAATATTCTCTATTTGAAAATAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

51.913

97.861

0.508
  comK/comK1 Staphylococcus aureus N315

51.913

97.861

0.508

Multiple sequence alignment