Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   APS55_RS01050 Genome accession   NZ_CP012920
Coordinates   183980..185356 (-) Length   458 a.a.
NCBI ID   WP_034531892.1    Uniprot ID   A0AAC8WAV4
Organism   Apilactobacillus kunkeei strain MP2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178980..190356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APS55_RS01030 (APS55_01020) - 179317..179736 (-) 420 WP_034532009.1 Mini-ribonuclease 3 -
  APS55_RS01035 (APS55_01025) cysS 179740..181146 (-) 1407 WP_034531896.1 cysteine--tRNA ligase -
  APS55_RS01040 (APS55_01030) gltX 181267..182757 (-) 1491 WP_034531895.1 glutamate--tRNA ligase -
  APS55_RS01045 (APS55_01035) - 182867..183958 (-) 1092 WP_034531894.1 PIN domain-containing protein -
  APS55_RS01050 (APS55_01040) radA 183980..185356 (-) 1377 WP_034531892.1 DNA repair protein RadA Machinery gene
  APS55_RS01055 (APS55_01045) - 185384..185920 (-) 537 WP_034531890.1 dUTP diphosphatase -
  APS55_RS01060 (APS55_01050) rpiA 186154..186843 (+) 690 WP_034531888.1 ribose-5-phosphate isomerase RpiA -
  APS55_RS01065 (APS55_01055) - 186949..188289 (+) 1341 WP_034531886.1 C1 family peptidase -
  APS55_RS01070 (APS55_01060) - 188325..188993 (-) 669 WP_034531884.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  APS55_RS01075 (APS55_01065) - 189008..189961 (-) 954 WP_034531882.1 DMT family transporter -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49695.89 Da        Isoelectric Point: 6.1927

>NTDB_id=158255 APS55_RS01050 WP_034531892.1 183980..185356(-) (radA) [Apilactobacillus kunkeei strain MP2]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSIHRMDFNGQQTKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKDQSVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLREVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=158255 APS55_RS01050 WP_034531892.1 183980..185356(-) (radA) [Apilactobacillus kunkeei strain MP2]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCAAAGTACTTGGGACATTGTCCTAACTG
TGGAAAATGGAATACATTTGAAGAACAAACCGTTCAAAAAGAAACATCGAGTTTGAAATCGATTCACCGAATGGATTTCA
ATGGTCAGCAAACAAAACCACAACTAATCAAAGACGTTAAGTTTGAAAAGGAATCACGTTTTGAAACTGAGTCCCAAGAA
TTTAACCGTGTATTAGGTGGCGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGAGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGCCAATTAGGTGCTAAGGACCAAAGCGTCTTATATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTCAGAGCGGAACGTTTATCAGTGAATGGCTCCAACATGTATCTATATCCAGAAACCGATATGGGTGCCATC
AAGTCTGCCATTGATGAGATTAAGCCAGATGCAGTCGTAATTGATTCTGTTCAAACGATTTCTGAGCCAGAGGTGGATTC
CGCAATTGGTTCCGTATCACAGGTAAGAGCAATTACCGCAGATTTAATGTCCATTGCAAAGACCAATGGAATTACAATCT
TTGTGGTTGGCCACGTTACTAAGGGTGGCTCAATTGCCGGACCTAAGACTTTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGAGACATGCATCATTCCTACCGTATCTTAAGAGCCGTGAAGAACCGTTTTGGTTCAACCGACGAGTTAGGAAT
TTTTGACATGCAAGAATCCGGACTACGAGAAGTTGCTAATCCATCAGAGGTCTTCTTGGAAGAACGCTTGAAGGACGCCA
ATGGTTCTGCAATCGTTGTCTCAATCGAAGGAACCAGACCCATCCTAGTCGAAATTCAGGCATTGGTAACACCATCCGTA
TTCGGGAACGCCCAAAGAACCGCTACCGGGATTGACCGTAACCGTGTAGCAGTTTTAATGGCGGTGCTTGAAAAACGTGC
CGGACTAATGCTACAAAACCAAGATGCCTTCTTAAAGGCTGCTGGTGGAGTTAAGTTGAACGAACCAGCAATTGATTTGG
CTGTAGCCATTAGTGTGGCATCAAGTTACAAGAACAGGGGAACCGACCCTAGTGAATGTTATATCGGTGAAATTGGTTTA
ACTGGTGAAATTAGACGAGTTAACCGCATTGAACAACGTGTTTTAGAAGCACAAAAGCTGGGCTTTAAGCGCGTATTGAT
ACCAAAACATAATATGTCAGGATGGACTGCTCCAGACGGAATTGAAGTCGTTGGTGTATCCACACTGGCTCAAGCGATTA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

AAA domain (AAA_25)

(71-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

63.216

99.127

0.627
  radA Streptococcus pneumoniae Rx1

63.216

99.127

0.627
  radA Streptococcus pneumoniae D39

63.216

99.127

0.627
  radA Streptococcus pneumoniae R6

63.216

99.127

0.627
  radA Streptococcus pneumoniae TIGR4

63.216

99.127

0.627
  radA Streptococcus mitis SK321

63.216

99.127

0.627
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

99.782

0.618

Multiple sequence alignment