Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   A8714_RS20170 Genome accession   NZ_CP015853
Coordinates   3977279..3977911 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain ATCC 43889     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3972279..3982911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8714_RS20145 (A8714_20275) yhfG 3972411..3972578 (+) 168 WP_000736862.1 YhfG family protein -
  A8714_RS20150 (A8714_20280) fic 3972568..3973170 (+) 603 WP_001280650.1 putative adenosine monophosphate-protein transferase Fic -
  A8714_RS20155 (A8714_20285) pabA 3973202..3973765 (+) 564 WP_000601867.1 aminodeoxychorismate synthase component 2 -
  A8714_RS20160 (A8714_20290) argD 3973851..3975071 (+) 1221 WP_000963819.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  A8714_RS20165 (A8714_20295) yhfK 3975138..3977228 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  A8714_RS20170 (A8714_20300) crp 3977279..3977911 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  A8714_RS20175 (A8714_20310) yhfA 3978213..3978617 (+) 405 WP_001148908.1 OsmC family protein -
  A8714_RS20180 (A8714_20315) prkB 3978672..3979541 (-) 870 WP_001274677.1 phosphoribulokinase -
  A8714_RS20185 (A8714_20320) yheU 3979595..3979813 (-) 219 WP_000907085.1 YheU family protein -
  A8714_RS20190 (A8714_20325) yheT 3979807..3980829 (-) 1023 WP_000057377.1 hydrolase -
  A8714_RS20195 (A8714_20330) yheS 3980829..3982742 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=155376 A8714_RS20170 WP_000242755.1 3977279..3977911(-) (crp) [Escherichia coli strain ATCC 43889]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=155376 A8714_RS20170 WP_000242755.1 3977279..3977911(-) (crp) [Escherichia coli strain ATCC 43889]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCTGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTCAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467