Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A8713_RS09565 Genome accession   NZ_CP015849
Coordinates   2192136..2194064 (+) Length   642 a.a.
NCBI ID   WP_064533034.1    Uniprot ID   -
Organism   Streptomyces sp. SAT1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2187136..2199064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8713_RS09550 (A8713_09540) - 2188412..2188714 (+) 303 WP_018570679.1 hypothetical protein -
  A8713_RS09555 (A8713_09545) - 2188776..2190230 (+) 1455 WP_064533032.1 FGGY family carbohydrate kinase -
  A8713_RS09560 (A8713_09550) rcrP 2190403..2192136 (+) 1734 WP_064533033.1 ABC transporter ATP-binding protein Regulator
  A8713_RS09565 (A8713_09555) rcrQ 2192136..2194064 (+) 1929 WP_064533034.1 ABC transporter ATP-binding protein Regulator
  A8713_RS09570 (A8713_09560) - 2194121..2195374 (-) 1254 WP_064533035.1 RNA polymerase sigma factor -
  A8713_RS09575 (A8713_09565) dnaG 2195545..2197458 (-) 1914 WP_064533036.1 DNA primase -
  A8713_RS09580 (A8713_09570) - 2197505..2198770 (-) 1266 WP_064533037.1 FAD/NAD(P)-binding oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69792.28 Da        Isoelectric Point: 6.0480

>NTDB_id=155265 A8713_RS09565 WP_064533034.1 2192136..2194064(+) (rcrQ) [Streptomyces sp. SAT1]
MAGPMGRMMAGGSPDSRSMDFKKSGKRLIAQFRPERATICILLACVVVSVTLSVIGPKILGKATDLVFAGIIGRQFPAGM
SKDETLASLRAHGQGSVADMLRSTDFTPGQGIDFGAVGEVLLFALGTFLVAGLLMAVATRLVNRSVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLNQSMGQLINSLLTIVGVLIVMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGKLNAHIEEMYTGHALVKVFGRQEESARQFAEQNEALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVPGVRPEELRGRVALE
HVSFRYEPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIARMSRDELRSAIGMVLQDT
WLFGGTIAENIAYGACREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLQHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHDELLSADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=155265 A8713_RS09565 WP_064533034.1 2192136..2194064(+) (rcrQ) [Streptomyces sp. SAT1]
ATGGCAGGGCCGATGGGGCGGATGATGGCCGGGGGCTCCCCGGACAGCCGCTCGATGGACTTCAAGAAGTCGGGCAAGCG
GCTCATCGCCCAGTTCCGACCCGAACGGGCCACGATCTGCATCCTGCTGGCGTGCGTGGTGGTGAGCGTCACCCTCAGCG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGCCGGCAGTTCCCGGCCGGGATG
TCCAAGGACGAGACCCTGGCCTCGCTGCGCGCGCACGGCCAGGGCTCGGTCGCCGACATGCTCCGGAGCACGGACTTCAC
GCCCGGACAGGGCATCGACTTCGGTGCCGTCGGCGAGGTGCTGCTGTTCGCGCTGGGCACGTTCCTGGTGGCCGGGCTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGTCGGTCAACCGGACCATGTTCCGGATGCGCGAGGACGTGCAGACCAAG
CTGTCGCGGCTGCCGCTGTCCTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCTCCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACCCTGAACCAGTCGATGGGCCAGCTCATCAACTCGCTGCTGACCATCGTCGGCGTGCTCATCGTGATGT
TCTGGGTCTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTGGCCACCCGCGTGGGCAAG
CGCTCCCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGCCGCCAGGAGGAGTCGGCGCGGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGTGTCATGCAGCCGCTGATGATGTTCGTGTCCAATCTGAACTATGTGCTGGTCGCG
GTCGTCGGCGGGCTGCGGGTCGCCTCGGGCACGCTGTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGGTCTTCGAAC
TGCTGGACGCCGAGGAGCAGGAGGCCGACCCGGTGCCGGGCGTGCGGCCCGAGGAGCTGCGCGGGCGGGTCGCGCTGGAG
CACGTGTCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGGACCTGTCCCTGACGGTCGAGCCGGGCCACACGGTCGC
GATCGTCGGCCCGACCGGCGCGGGCAAGACCACCCTGGTCAACCTCCTGATGCGGTTCTACGACGTCACCGGCGGACGGA
TCACCCTGGACGGGGTGGACATCGCCCGGATGTCGCGCGACGAACTGCGCTCCGCCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCGCCTGCCGCGAGGTGACGCGCGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGACCGGTTCGTGCGGACCCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCCTTCCTGTCCGACCCGGTGATCCTCGTGCTGGACGAG
GCGACCAGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCAAACTCCAGCACGGCAGGACGTCGTT
CGTCATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACACCATCCTGGTGATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACGACGAGCTGCTGTCGGCCGACGGCGCCTACGCCCGCCTGTACAAGGCGCAGTTCGCGCAGGCGGTCGCGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.64

97.352

0.396