Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AMD29_RS03955 Genome accession   NZ_CP012419
Coordinates   724482..725291 (+) Length   269 a.a.
NCBI ID   WP_001289497.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SG-M1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 719482..730291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD29_RS03930 (AMD29_03925) - 719811..720506 (-) 696 WP_000173642.1 amino acid ABC transporter permease -
  AMD29_RS03935 (AMD29_03930) - 720519..721319 (-) 801 WP_000946165.1 transporter substrate-binding domain-containing protein -
  AMD29_RS03940 (AMD29_03935) - 721331..722086 (-) 756 WP_000053145.1 amino acid ABC transporter ATP-binding protein -
  AMD29_RS03945 (AMD29_03940) vicR 722426..723136 (+) 711 WP_000722052.1 response regulator YycF Regulator
  AMD29_RS03950 (AMD29_03945) vicK 723129..724478 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AMD29_RS03955 (AMD29_03950) vicX 724482..725291 (+) 810 WP_001289497.1 MBL fold metallo-hydrolase Regulator
  AMD29_RS03960 (AMD29_03955) - 725294..725662 (+) 369 WP_000719384.1 YbaN family protein -
  AMD29_RS03965 (AMD29_03960) rnc 725838..726524 (+) 687 WP_000661526.1 ribonuclease III -
  AMD29_RS03970 (AMD29_03965) smc 726532..730071 (+) 3540 WP_000478794.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30243.22 Da        Isoelectric Point: 6.2265

>NTDB_id=154393 AMD29_RS03955 WP_001289497.1 724482..725291(+) (vicX) [Streptococcus agalactiae strain SG-M1]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=154393 AMD29_RS03955 WP_001289497.1 724482..725291(+) (vicX) [Streptococcus agalactiae strain SG-M1]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAGGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment