Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V471_RS05620 Genome accession   NZ_CP015283
Coordinates   1094494..1095138 (+) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089494..1100138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS05600 (V471_05520) stkP/pknB 1089851..1091731 (+) 1881 WP_002886860.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  V471_RS05605 (V471_05525) - 1091877..1092635 (+) 759 WP_002886861.1 potassium channel family protein -
  V471_RS05610 (V471_05530) liaF 1092799..1093497 (+) 699 WP_084871195.1 cell wall-active antibiotics response protein LiaF -
  V471_RS05615 (V471_05535) - 1093494..1094504 (+) 1011 WP_045768527.1 sensor histidine kinase -
  V471_RS05620 (V471_05540) vraR 1094494..1095138 (+) 645 WP_002884791.1 response regulator transcription factor Regulator
  V471_RS05635 (V471_05555) rimM 1095835..1096353 (+) 519 WP_002884411.1 ribosome maturation factor RimM -
  V471_RS05640 (V471_05560) trmD 1096343..1097062 (+) 720 WP_002886864.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V471_RS05645 (V471_05565) - 1097064..1098062 (+) 999 WP_070847633.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=153175 V471_RS05620 WP_002884791.1 1094494..1095138(+) (vraR) [Streptococcus salivarius strain ATCC 25975]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=153175 V471_RS05620 WP_002884791.1 1094494..1095138(+) (vraR) [Streptococcus salivarius strain ATCC 25975]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGACTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTCGTTGGAGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTCG
TCGTTATGGACCTTGTTATGCCTGAATTAGATGGTGTTCAAGCGACTTTGGAATTGCTCAAAGAGTGGCCTGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTACCCAGTCATTGAAGCTGGTGCCAAAGGCTATATGCTTAA
AACCAGCAGTGCGGCAGAGATACTCAATAGTATCCGAAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGACA
ATAAGATTAAATACCATGATAGTCATCCGGACCTACACGACGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTCTG
GCTAAGGGGTATGACAATCAAACTATTGCTAATGAGCTATTTATTTCATTGAAGACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTTAATGTCGATGACCGTACTCAGGCTGTTGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379