Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   V471_RS04620 Genome accession   NZ_CP015283
Coordinates   887344..888006 (+) Length   220 a.a.
NCBI ID   WP_045001926.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ATCC 25975     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882344..893006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V471_RS04595 (V471_04530) - 882652..883362 (+) 711 WP_013990087.1 ABC transporter ATP-binding protein -
  V471_RS04600 (V471_04535) - 883497..884156 (+) 660 WP_070849374.1 CBS and ACT domain-containing protein -
  V471_RS04605 (V471_04540) cysK 884335..885261 (-) 927 WP_070849377.1 cysteine synthase A -
  V471_RS04610 (V471_04545) - 885363..885989 (-) 627 WP_070849380.1 YigZ family protein -
  V471_RS04615 (V471_04550) comFA/cflA 886044..887363 (+) 1320 WP_084871141.1 DEAD/DEAH box helicase Machinery gene
  V471_RS04620 (V471_04555) comFC/cflB 887344..888006 (+) 663 WP_045001926.1 ComF family protein Machinery gene
  V471_RS04625 (V471_04560) hpf 888085..888633 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26012.31 Da        Isoelectric Point: 8.7502

>NTDB_id=153156 V471_RS04620 WP_045001926.1 887344..888006(+) (comFC/cflB) [Streptococcus salivarius strain ATCC 25975]
MKCLLCNDWIESVPKLRDLITFNQREEYSCLSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYHYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNKLKPFLTKGFTIVPVPLSEERLAERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTRKERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=153156 V471_RS04620 WP_045001926.1 887344..888006(+) (comFC/cflB) [Streptococcus salivarius strain ATCC 25975]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAGAGAGAAGA
GTACTCCTGCTTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCACTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAAGTTAAAACCATTTTTGACGAAAGGTTTTACCATAGTGCCGGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TTAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGCAAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCTACTTTATATCAGATGGTTCAACTATTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45