Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   HKU488_RS08680 Genome accession   NZ_CP012045
Coordinates   1705141..1705692 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain HKU488     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700141..1710692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKU488_RS08655 (HKU488_01626) - 1701509..1702354 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  HKU488_RS08660 (HKU488_01627) - 1702419..1702979 (-) 561 WP_002995157.1 TIGR01440 family protein -
  HKU488_RS08665 (HKU488_01628) - 1702993..1703463 (-) 471 WP_002988139.1 ECF transporter S component -
  HKU488_RS08670 (HKU488_01629) - 1703453..1704217 (-) 765 WP_002988136.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HKU488_RS08675 (HKU488_01630) truA 1704207..1704956 (-) 750 WP_002988132.1 tRNA pseudouridine(38-40) synthase TruA -
  HKU488_RS08680 (HKU488_01631) comX/sigX/comX2/sigX2 1705141..1705692 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=150802 HKU488_RS08680 WP_010921894.1 1705141..1705692(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain HKU488]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=150802 HKU488_RS08680 WP_010921894.1 1705141..1705692(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain HKU488]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.