Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABW99_RS17970 | Genome accession | NZ_CP011568 |
| Coordinates | 3906065..3906553 (-) | Length | 162 a.a. |
| NCBI ID | WP_047215079.1 | Uniprot ID | A0A522JJX4 |
| Organism | Pandoraea thiooxydans strain DSM 25325 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3901065..3911553
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABW99_RS17945 (ABW99_14135) | - | 3901152..3902210 (-) | 1059 | WP_047215076.1 | ABC transporter substrate-binding protein | - |
| ABW99_RS17950 (ABW99_14140) | - | 3902280..3903077 (-) | 798 | WP_047215077.1 | ABC transporter ATP-binding protein | - |
| ABW99_RS17955 (ABW99_14145) | - | 3903105..3903992 (-) | 888 | WP_083566820.1 | ABC transporter permease | - |
| ABW99_RS17960 (ABW99_14150) | - | 3903989..3904729 (-) | 741 | WP_047216667.1 | ABC transporter permease | - |
| ABW99_RS17965 (ABW99_14155) | - | 3904954..3905970 (+) | 1017 | WP_047215078.1 | LacI family DNA-binding transcriptional regulator | - |
| ABW99_RS17970 (ABW99_14160) | ssb | 3906065..3906553 (-) | 489 | WP_047215079.1 | single-stranded DNA-binding protein | Machinery gene |
| ABW99_RS17975 (ABW99_14165) | - | 3906586..3907749 (-) | 1164 | WP_047215080.1 | MFS transporter | - |
| ABW99_RS17980 (ABW99_14170) | uvrA | 3907994..3910858 (+) | 2865 | WP_047215081.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17123.98 Da Isoelectric Point: 5.9615
>NTDB_id=146967 ABW99_RS17970 WP_047215079.1 3906065..3906553(-) (ssb) [Pandoraea thiooxydans strain DSM 25325]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKSSGEMKEATEWHRVAFFGRLAEIAGEYLKKGSPVYIEG
RIRTRQWEKDGQKQYTTEIVAEQMQMLGGRGEGGGGGGGGGGYSRESSGGGAPARSAPSRSAPAASKPAGGGFDDMDDDI
PF
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKSSGEMKEATEWHRVAFFGRLAEIAGEYLKKGSPVYIEG
RIRTRQWEKDGQKQYTTEIVAEQMQMLGGRGEGGGGGGGGGGYSRESSGGGAPARSAPSRSAPAASKPAGGGFDDMDDDI
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=146967 ABW99_RS17970 WP_047215079.1 3906065..3906553(-) (ssb) [Pandoraea thiooxydans strain DSM 25325]
ATGGCATCAGTCAACAAAGTCATTCTGGTCGGCAACCTCGGGGCTGACCCGGAAACCCGCTACATGCCAAGCGGCGACGC
GGTCACCAACATTCGCCTGGCCACCACCGATCGCTACAAGGACAAAAGTAGCGGTGAAATGAAGGAAGCGACCGAATGGC
ACCGCGTGGCGTTCTTCGGGCGCCTGGCGGAAATCGCCGGCGAATACCTGAAGAAGGGCTCGCCGGTCTATATCGAAGGC
CGTATCCGCACCCGCCAGTGGGAAAAGGACGGCCAAAAGCAATACACCACCGAAATCGTCGCCGAGCAAATGCAAATGCT
GGGCGGCCGCGGTGAAGGCGGTGGCGGCGGCGGTGGTGGTGGAGGCTACTCGCGCGAATCGTCGGGCGGCGGCGCGCCGG
CCCGTTCGGCCCCGTCGCGCTCGGCACCGGCCGCATCCAAGCCGGCCGGCGGCGGATTCGACGACATGGACGACGATATT
CCGTTCTAA
ATGGCATCAGTCAACAAAGTCATTCTGGTCGGCAACCTCGGGGCTGACCCGGAAACCCGCTACATGCCAAGCGGCGACGC
GGTCACCAACATTCGCCTGGCCACCACCGATCGCTACAAGGACAAAAGTAGCGGTGAAATGAAGGAAGCGACCGAATGGC
ACCGCGTGGCGTTCTTCGGGCGCCTGGCGGAAATCGCCGGCGAATACCTGAAGAAGGGCTCGCCGGTCTATATCGAAGGC
CGTATCCGCACCCGCCAGTGGGAAAAGGACGGCCAAAAGCAATACACCACCGAAATCGTCGCCGAGCAAATGCAAATGCT
GGGCGGCCGCGGTGAAGGCGGTGGCGGCGGCGGTGGTGGTGGAGGCTACTCGCGCGAATCGTCGGGCGGCGGCGCGCCGG
CCCGTTCGGCCCCGTCGCGCTCGGCACCGGCCGCATCCAAGCCGGCCGGCGGCGGATTCGACGACATGGACGACGATATT
CCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
50.829 |
100 |
0.568 |
| ssb | Glaesserella parasuis strain SC1401 |
45.902 |
100 |
0.519 |
| ssb | Neisseria meningitidis MC58 |
47.701 |
100 |
0.512 |
| ssb | Neisseria gonorrhoeae MS11 |
47.701 |
100 |
0.512 |