Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AYM23_RS06880 Genome accession   NZ_CP014397
Coordinates   1317040..1317813 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain USA300-SUR10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1312040..1322813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM23_RS06860 (AYM23_06640) trmFO 1312384..1313691 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  AYM23_RS06865 (AYM23_06645) xerC 1314108..1315004 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  AYM23_RS06870 (AYM23_06650) hslV 1315001..1315546 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  AYM23_RS06875 (AYM23_06655) hslU 1315612..1317015 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  AYM23_RS06880 (AYM23_06660) codY 1317040..1317813 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AYM23_RS06885 (AYM23_06665) - 1317864..1317956 (+) 93 WP_001790530.1 hypothetical protein -
  AYM23_RS06890 (AYM23_06670) rpsB 1318155..1318922 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  AYM23_RS06895 (AYM23_06675) - 1318956..1319069 (+) 114 WP_001789890.1 hypothetical protein -
  AYM23_RS06900 (AYM23_06680) tsf 1319104..1319985 (+) 882 WP_000201387.1 translation elongation factor Ts -
  AYM23_RS06905 (AYM23_06685) pyrH 1320122..1320844 (+) 723 WP_000057330.1 UMP kinase -
  AYM23_RS06910 (AYM23_06690) frr 1320863..1321417 (+) 555 WP_001280006.1 ribosome recycling factor -
  AYM23_RS06915 (AYM23_06695) - 1321790..1322560 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=146423 AYM23_RS06880 WP_000055337.1 1317040..1317813(+) (codY) [Staphylococcus aureus strain USA300-SUR10]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=146423 AYM23_RS06880 WP_000055337.1 1317040..1317813(+) (codY) [Staphylococcus aureus strain USA300-SUR10]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428