Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SAHN016_RS03835 Genome accession   NZ_CP011325
Coordinates   730336..731340 (+) Length   334 a.a.
NCBI ID   WP_001090622.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain HN016     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 725336..736340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAHN016_RS03820 (SAHN016_03820) - 725634..727424 (+) 1791 WP_000149447.1 glycoside hydrolase family 3 protein -
  SAHN016_RS03825 (SAHN016_03825) - 727446..728921 (-) 1476 WP_000468679.1 IS1182-like element IS1563 family transposase -
  SAHN016_RS03830 (SAHN016_03830) - 729041..730126 (-) 1086 WP_000040811.1 M24 family metallopeptidase -
  SAHN016_RS03835 (SAHN016_03835) ccpA 730336..731340 (+) 1005 WP_001090622.1 catabolite control protein A Regulator
  SAHN016_RS03840 (SAHN016_03840) - 731471..732937 (+) 1467 WP_000180590.1 alpha-amylase -
  SAHN016_RS03845 (SAHN016_03845) - 732982..733980 (+) 999 WP_000866350.1 glycosyltransferase family 4 protein -
  SAHN016_RS03850 (SAHN016_03850) - 733982..735316 (+) 1335 WP_001219475.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36605.64 Da        Isoelectric Point: 5.7185

>NTDB_id=144578 SAHN016_RS03835 WP_001090622.1 730336..731340(+) (ccpA) [Streptococcus agalactiae strain HN016]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILARGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNTDYKAAAVDVIDILAGNHKDIAFVSGPLIDDINGKVRLAGYKEGLKKNGLNFKEGLVFEANYRYAEGFALAQRVINAG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPIAQYTRPNLTSISQPVYDLGAVSMRMLTKIMHKEELEEKEI
VLNHGIVKRGTTNN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=144578 SAHN016_RS03835 WP_001090622.1 730336..731340(+) (ccpA) [Streptococcus agalactiae strain HN016]
ATGAATACAGATGATACGATTACGATTTATGATGTTGCCCGTGAAGCAGGTGTTTCGATGGCAACTGTTAGTCGTGTGGT
AAATGGAAATAAAAATGTCAAGGAAAATACACGTAAGAAAGTCCTTGAAGTTATTGATCGTCTTGACTATCGTCCAAATG
CTGTGGCGCGTGGTTTAGCAAGTAAAAAAACGACAACTGTTGGTGTTGTCATTCCTAATATCGCAAATAGCTACTTTTCA
ATTTTAGCGCGTGGTATTGATGATATTGCAGCAATGTACAAATATAACATTGTCCTTGCTTCAAGTGATGAAGACGATGA
TAAAGAGGTTAATGTTGTTAATACTTTGTTTGCTAAGCAAGTAGACGGTATTATTTTTATGGGACACCACTTAACTGAAA
AGATTCGTGCAGAGTTCTCTCGTTCACGCACACCGATTGTTTTAGCAGGTACTGTGGACCTTGAGCATCAATTACCAAGT
GTTAATACCGATTACAAAGCAGCAGCAGTTGATGTTATTGATATTTTAGCTGGCAATCATAAAGACATTGCTTTTGTATC
AGGACCACTTATTGACGATATTAATGGCAAGGTTCGTTTGGCAGGATACAAAGAAGGTCTCAAGAAAAATGGCTTAAACT
TTAAAGAGGGGTTGGTTTTTGAAGCCAACTACCGTTATGCTGAAGGCTTTGCATTAGCTCAACGCGTGATTAATGCTGGA
GCAACAGCAGCATATGTTGCTGAGGATGAGTTAGCGGCAGGTTTGTTAAATGGTCTTTTTGAGGCAGGTAAACGTGTTCC
TGAAGATTTTGAAATTATCACAAGCAATGACTCGCCAATCGCACAATATACACGTCCTAACTTAACTTCTATCAGTCAAC
CGGTCTATGATTTGGGTGCTGTTAGCATGCGTATGCTAACAAAAATTATGCACAAAGAAGAGTTGGAAGAAAAAGAAATA
GTGCTTAATCACGGGATTGTTAAACGTGGCACAACAAATAATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.614

99.401

0.781
  ccpA Streptococcus pneumoniae D39

76.807

99.401

0.763
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566

Multiple sequence alignment