Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   XM40_RS00175 Genome accession   NZ_CP011278
Coordinates   31075..31365 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-S60     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 26075..36365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XM40_RS00135 (XM40_00135) darA 26092..26421 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  XM40_RS00140 (XM40_00140) - 26434..26874 (+) 441 WP_004264730.1 DUF327 family protein -
  XM40_RS00145 (XM40_00145) holB 26886..27875 (+) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  XM40_RS00150 (XM40_00150) ricT 27878..28705 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  XM40_RS00155 (XM40_00155) yabA 28720..29079 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  XM40_RS00160 (XM40_00160) - 29140..29883 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  XM40_RS00165 (XM40_00165) - 29870..30169 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  XM40_RS00170 (XM40_00170) rsmI 30144..31025 (+) 882 WP_043866771.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  XM40_RS00175 (XM40_00175) abrB 31075..31365 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  XM40_RS00180 (XM40_00180) metG 31848..33839 (+) 1992 WP_043866772.1 methionine--tRNA ligase -
  XM40_RS00185 (XM40_00185) - 33915..34682 (+) 768 WP_043866773.1 TatD family hydrolase -
  XM40_RS00190 (XM40_00190) - 34817..36142 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=144084 XM40_RS00175 WP_169510469.1 31075..31365(-) (abrB) [Bacillus velezensis strain L-S60]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=144084 XM40_RS00175 WP_169510469.1 31075..31365(-) (abrB) [Bacillus velezensis strain L-S60]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment