Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SMQ301_RS03690 Genome accession   NZ_CP011217
Coordinates   688280..688573 (+) Length   97 a.a.
NCBI ID   WP_014621407.1    Uniprot ID   A0AAU9H9S0
Organism   Streptococcus thermophilus strain SMQ-301     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 683280..693573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS03665 (SMQ301_0720) - 684548..684739 (+) 192 WP_046206428.1 hypothetical protein -
  SMQ301_RS10430 (SMQ301_0721) - 684741..684941 (+) 201 WP_144406659.1 hypothetical protein -
  SMQ301_RS09995 (SMQ301_0722) - 685005..685259 (+) 255 WP_052718228.1 hypothetical protein -
  SMQ301_RS03675 (SMQ301_0723) - 685371..686585 (+) 1215 WP_046206429.1 ATP-binding protein -
  SMQ301_RS03680 (SMQ301_0724) - 686569..687759 (+) 1191 WP_046206430.1 restriction endonuclease subunit S -
  SMQ301_RS10000 (SMQ301_0725) - 687972..688290 (+) 319 Protein_665 type II toxin-antitoxin system RelE/ParE family toxin -
  SMQ301_RS03690 (SMQ301_0726) HI0659 688280..688573 (+) 294 WP_014621407.1 helix-turn-helix domain-containing protein Machinery gene
  SMQ301_RS03695 (SMQ301_0727) - 688595..690196 (+) 1602 WP_046206431.1 type I restriction-modification system subunit M -
  SMQ301_RS12365 - 690274..690706 (+) 433 Protein_668 PD-(D/E)XK nuclease family transposase -
  SMQ301_RS12750 - 690770..691774 (+) 1005 Protein_669 DNA/RNA non-specific endonuclease -
  SMQ301_RS03710 (SMQ301_0731) - 691924..692484 (+) 561 WP_011680991.1 LemA family protein -
  SMQ301_RS03715 (SMQ301_0732) htpX 692486..693385 (+) 900 WP_011680992.1 zinc metalloprotease HtpX -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10744.50 Da        Isoelectric Point: 5.8962

>NTDB_id=143623 SMQ301_RS03690 WP_014621407.1 688280..688573(+) (HI0659) [Streptococcus thermophilus strain SMQ-301]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKI

Nucleotide


Download         Length: 294 bp        

>NTDB_id=143623 SMQ301_RS03690 WP_014621407.1 688280..688573(+) (HI0659) [Streptococcus thermophilus strain SMQ-301]
ATGAAGAATAGTGCCATCGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACCAAGGAAGAAATCCTGGAAAGTGA
TTTACGGGTCGCGATTATGACTGAGCTGATCGAGGCTCGACACGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGTCCTCAATTGGACACGGTTTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTCGCTGTCGTCCCACTGGAACAAGAAAAGATCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment